Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6G66_RS18915 Genome accession   NZ_CP065668
Coordinates   4006667..4007233 (+) Length   188 a.a.
NCBI ID   WP_012202749.1    Uniprot ID   A0A080NKP3
Organism   Delftia acidovorans strain FDAARGOS_909     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4001667..4012233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G66_RS18905 (I6G66_18900) uvrA 4001932..4005057 (-) 3126 WP_197954011.1 excinuclease ABC subunit UvrA -
  I6G66_RS18910 (I6G66_18905) - 4005331..4006506 (+) 1176 WP_197957482.1 MFS transporter -
  I6G66_RS18915 (I6G66_18910) ssb 4006667..4007233 (+) 567 WP_012202749.1 single-stranded DNA-binding protein Machinery gene
  I6G66_RS18920 (I6G66_18915) - 4007320..4007817 (+) 498 WP_197954013.1 hypothetical protein -
  I6G66_RS18925 (I6G66_18920) - 4007873..4008019 (+) 147 WP_183017830.1 hypothetical protein -
  I6G66_RS18930 (I6G66_18925) - 4008141..4009595 (+) 1455 WP_420042908.1 SulP family inorganic anion transporter -
  I6G66_RS18935 (I6G66_18930) paaE 4009626..4010723 (-) 1098 WP_183017828.1 1,2-phenylacetyl-CoA epoxidase subunit PaaE -
  I6G66_RS18940 (I6G66_18935) paaD 4010720..4011289 (-) 570 WP_047218903.1 1,2-phenylacetyl-CoA epoxidase subunit PaaD -
  I6G66_RS18945 (I6G66_18940) paaC 4011289..4012071 (-) 783 WP_183017827.1 1,2-phenylacetyl-CoA epoxidase subunit PaaC -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20389.52 Da        Isoelectric Point: 5.9554

>NTDB_id=512820 I6G66_RS18915 WP_012202749.1 4006667..4007233(+) (ssb) [Delftia acidovorans strain FDAARGOS_909]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNTGENKEATEWHRVVFNGRLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQASGQERYATEIRADSMQMLGSRQGGGGGQQGGGYGDEGYGDSGYDAPPQQQQRRPAPAPMAAPAPRQAPA
QRPAPAPMAPPPQRAASGFDDMDDDIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=512820 I6G66_RS18915 WP_012202749.1 4006667..4007233(+) (ssb) [Delftia acidovorans strain FDAARGOS_909]
ATGGCATCCGTCAACAAGGTCATCATCGTCGGCAACCTCGGACGCGACCCCGAAATGCGCACCTTCCCGAGTGGCGATCA
GGTGGCCAACGTGACCATCGCCACCACCGACCGCTGGCGCGACAAGAACACCGGCGAGAACAAGGAAGCCACCGAGTGGC
ACCGCGTGGTCTTCAACGGCCGCCTGGCCGAAATCGTGGGCCAGTACCTGCGCAAGGGCAGCCAGGTCTATGTCGAAGGC
AGCCTGCGCACCCGCAAGTGGACCGACCAGGCCTCCGGCCAGGAACGCTACGCCACCGAAATCCGCGCCGACAGCATGCA
GATGCTGGGCAGCCGCCAGGGCGGCGGCGGTGGCCAGCAAGGCGGCGGCTACGGCGATGAAGGCTACGGCGACAGCGGCT
ACGACGCCCCTCCCCAGCAGCAGCAGCGCCGTCCGGCCCCTGCCCCCATGGCGGCGCCCGCACCGCGCCAGGCCCCTGCC
CAGCGCCCCGCTCCTGCGCCCATGGCCCCCCCGCCCCAGCGCGCGGCCTCGGGCTTTGACGACATGGATGACGACATTCC
GTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A080NKP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.333

100

0.553
  ssb Glaesserella parasuis strain SC1401

53.093

100

0.548
  ssb Neisseria gonorrhoeae MS11

46.032

100

0.463
  ssb Neisseria meningitidis MC58

44.974

100

0.452