Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6G67_RS00545 Genome accession   NZ_CP065666
Coordinates   99494..100078 (+) Length   194 a.a.
NCBI ID   WP_004691666.1    Uniprot ID   A0A7H8SPE4
Organism   Acinetobacter johnsonii strain FDAARGOS_910     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 94494..105078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G67_RS00525 (I6G67_00525) - 95417..95791 (-) 375 WP_004691672.1 hypothetical protein -
  I6G67_RS00530 (I6G67_00530) tenA 95953..96627 (-) 675 WP_004691671.1 thiaminase II -
  I6G67_RS00535 (I6G67_00535) - 96839..97918 (+) 1080 WP_004691668.1 DUF475 domain-containing protein -
  I6G67_RS00540 (I6G67_00540) - 98078..99442 (+) 1365 WP_004691667.1 MFS transporter -
  I6G67_RS00545 (I6G67_00545) ssb 99494..100078 (+) 585 WP_004691666.1 single-stranded DNA-binding protein Machinery gene
  I6G67_RS00550 (I6G67_00550) - 100234..101460 (+) 1227 WP_026056406.1 site-specific integrase -
  I6G67_RS00555 (I6G67_00555) - 101447..103009 (+) 1563 WP_017396905.1 site-specific integrase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21300.03 Da        Isoelectric Point: 6.4819

>NTDB_id=512768 I6G67_RS00545 WP_004691666.1 99494..100078(+) (ssb) [Acinetobacter johnsonii strain FDAARGOS_910]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDSWTDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDNNRQQGEQMQGGNDGYAQPRFNNNQGGGYNNNNNQGGYGGNPAAGNSNNQQ
SGYANNNPSGFAPKAAPQSAPAAAPADMDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=512768 I6G67_RS00545 WP_004691666.1 99494..100078(+) (ssb) [Acinetobacter johnsonii strain FDAARGOS_910]
ATGCGCGGTGTAAATAAAGTTATTTTAGTGGGCACATTAGGCCGAGATCCAGAGACGAAAACTTTTCCAAATGGTGGTTC
GTTGACCCAGTTTTCAATTGCAACGAGCGACTCTTGGACAGACAAAAGCACAGGTGAGCGTAAAGAGCAAACCGAATGGC
ACCGTATTGTGTTACACAACCGTCTAGGTGAAATTGCGCAACAATACCTACGTAAAGGTTCGAAAGTTTATATTGAAGGT
TCACTGCGTACTCGTCAGTGGACAGATCAAAATGGTCAAGAACGCTACACCACAGAAATTCGTGGTGAGCAAATGCAGAT
GCTCGACAACAACCGTCAGCAAGGCGAGCAAATGCAAGGCGGAAATGATGGTTATGCACAACCACGTTTCAACAATAACC
AAGGTGGTGGTTATAACAATAACAACAACCAAGGCGGTTATGGCGGCAATCCTGCAGCGGGCAATAGCAACAACCAACAA
AGTGGTTATGCGAACAATAACCCAAGCGGTTTTGCACCAAAGGCGGCTCCTCAGTCAGCGCCTGCGGCAGCACCAGCAGA
TATGGATGATGATCTTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H8SPE4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.246

100

0.526
  ssb Vibrio cholerae strain A1552

44.724

100

0.459
  ssb Neisseria meningitidis MC58

41.414

100

0.423
  ssb Neisseria gonorrhoeae MS11

41.414

100

0.423