Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   I6G71_RS00005 Genome accession   NZ_CP065653
Coordinates   2181131..109 (+) Length   100 a.a.
NCBI ID   WP_002224295.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_914     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2176131..5109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - comE 2181131..109 (+) -2181021 - - Machinery gene

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 10198.14 Da        Isoelectric Point: 10.4937

>NTDB_id=512661 I6G71_RS00005 WP_002224295.1 2181131..109(+) (comE) [Neisseria meningitidis strain FDAARGOS_914]
MKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQAS
VGAPAPKGPAKPALPAAKK

Nucleotide


Download         Length: 0 bp        

>NTDB_id=512661 I6G71_RS00005 WP_002224295.1 2181131..109(+) (comE) [Neisseria meningitidis strain FDAARGOS_914]

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

96.97

100

0.97
  comE Neisseria gonorrhoeae MS11

96.97

100

0.97
  comE Neisseria gonorrhoeae MS11

96.97

100

0.97
  comE Neisseria gonorrhoeae MS11

96.97

100

0.97
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.852

81.818

0.424
  comEA Vibrio campbellii strain DS40M4

41.935

93.939

0.394
  comEA Vibrio parahaemolyticus RIMD 2210633

40

90.909

0.364