Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M892_RS12640 Genome accession   NC_022269
Coordinates   2740014..2740550 (+) Length   178 a.a.
NCBI ID   WP_005432828.1    Uniprot ID   -
Organism   Vibrio campbellii ATCC BAA-1116     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2735014..2745550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M892_RS12625 (M892_12670) uvrA 2735078..2737900 (-) 2823 WP_012129012.1 excinuclease ABC subunit UvrA Machinery gene
  M892_RS12630 (M892_12675) galU 2738039..2738911 (-) 873 WP_005432802.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  M892_RS12635 (M892_12680) qstR 2739076..2739720 (-) 645 WP_012129010.1 LuxR C-terminal-related transcriptional regulator Regulator
  M892_RS12640 (M892_12685) ssb 2740014..2740550 (+) 537 WP_005432828.1 single-stranded DNA-binding protein Machinery gene
  M892_RS12645 (M892_17550) - 2740634..2742041 (-) 1408 Protein_2453 IS4 family transposase -
  M892_RS12650 (M892_12690) csrD 2742367..2744397 (+) 2031 WP_012129007.1 RNase E specificity factor CsrD -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19774.84 Da        Isoelectric Point: 4.9269

>NTDB_id=51227 M892_RS12640 WP_005432828.1 2740014..2740550(+) (ssb) [Vibrio campbellii ATCC BAA-1116]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPMGGGQPQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQ
PQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=51227 M892_RS12640 WP_005432828.1 2740014..2740550(+) (ssb) [Vibrio campbellii ATCC BAA-1116]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATCACGATTGCAACTTCTGAGTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGCTGTTTGGCAAACTTGCTGAAGTAGCAGGCGAGTACCTACGCAAAGGTTCTCAAGTTTACGTT
GAAGGTCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGACCGCTACTCAACAGAAGTGGTTGTTCAAGGCTT
CAATGGCGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCACCAATGGGTGGTGGTCAGCCTCAACAGCAGCAAC
AAGGTGGTTGGGGTCAACCTCAACAACCAGCTCAGCAGCAATACAATGCTCCTCAGCAACAGCAACAGGCTCCGCAGCAA
CCTCAGCAGCAATACAACGAGCCACCAATGGATTTCGACGACGATATTCCGTTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.447

100

0.809
  ssb Glaesserella parasuis strain SC1401

56.545

100

0.607
  ssb Neisseria meningitidis MC58

48.333

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.333

100

0.489

Multiple sequence alignment