Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   I6H05_RS05675 Genome accession   NZ_CP065604
Coordinates   1206110..1206562 (+) Length   150 a.a.
NCBI ID   WP_005586498.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain FDAARGOS_948     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1201110..1211562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H05_RS05660 (I6H05_05660) pnp 1202067..1204196 (-) 2130 WP_025298076.1 polyribonucleotide nucleotidyltransferase -
  I6H05_RS05665 (I6H05_05665) nanQ 1204490..1204960 (+) 471 WP_005547536.1 N-acetylneuraminate anomerase -
  I6H05_RS05670 (I6H05_05670) ampD 1205434..1205988 (-) 555 WP_005567973.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  I6H05_RS05675 (I6H05_05675) pilA 1206110..1206562 (+) 453 WP_005586498.1 pilin Machinery gene
  I6H05_RS05680 (I6H05_05680) pilB 1206589..1207998 (+) 1410 WP_019518272.1 GspE/PulE family protein Machinery gene
  I6H05_RS05685 (I6H05_05685) pilC 1207991..1209214 (+) 1224 WP_025298077.1 type II secretion system F family protein Machinery gene
  I6H05_RS05690 (I6H05_05690) - 1209211..1209900 (+) 690 WP_005547547.1 prepilin peptidase -
  I6H05_RS05695 (I6H05_05695) coaE 1209950..1210573 (+) 624 WP_005547548.1 dephospho-CoA kinase -
  I6H05_RS05700 (I6H05_05700) yacG 1210563..1210775 (+) 213 WP_005567966.1 DNA gyrase inhibitor YacG -
  I6H05_RS05705 (I6H05_05705) - 1210775..1211047 (+) 273 WP_005547552.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 15547.96 Da        Isoelectric Point: 9.1384

>NTDB_id=512181 I6H05_RS05675 WP_005586498.1 1206110..1206562(+) (pilA) [Aggregatibacter actinomycetemcomitans strain FDAARGOS_948]
MKIQSAFISLKFVKKGFTLIELMIVIAIVAILATVAVPSYQNYTKKAAVSELLQASAPLRSEVELCIYNTGKAENCSGGQ
NGIQADVADASKQKYVKSTAVKGGVITVTGKGSLDKISYTLTASGTAASGVSWNAACGNNADIFPAGFCS

Nucleotide


Download         Length: 453 bp        

>NTDB_id=512181 I6H05_RS05675 WP_005586498.1 1206110..1206562(+) (pilA) [Aggregatibacter actinomycetemcomitans strain FDAARGOS_948]
ATGAAAATTCAATCCGCGTTTATTTCGCTAAAATTCGTTAAAAAAGGGTTTACATTAATCGAATTAATGATCGTCATCGC
TATTGTTGCTATTCTCGCCACCGTAGCCGTACCATCTTATCAAAATTACACTAAAAAAGCGGCGGTTTCCGAATTATTAC
AAGCCTCCGCCCCATTACGTTCCGAAGTGGAACTCTGTATTTATAACACCGGTAAGGCTGAAAATTGTAGCGGCGGACAA
AACGGCATTCAAGCAGATGTTGCAGATGCTTCGAAACAAAAATATGTGAAATCCACTGCGGTCAAAGGCGGCGTCATCAC
CGTTACCGGCAAAGGCAGTTTGGATAAAATCAGCTACACCCTTACCGCTTCGGGCACGGCTGCCAGCGGGGTCAGCTGGA
ACGCCGCCTGCGGCAATAATGCCGACATTTTCCCGGCAGGTTTCTGTTCTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(14-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Haemophilus influenzae 86-028NP

62.319

92

0.573
  pilA Haemophilus influenzae Rd KW20

59.028

96

0.567
  pilA Glaesserella parasuis strain SC1401

53.846

95.333

0.513