Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   I6H05_RS05680 Genome accession   NZ_CP065604
Coordinates   1206589..1207998 (+) Length   469 a.a.
NCBI ID   WP_019518272.1    Uniprot ID   Q9JRM9
Organism   Aggregatibacter actinomycetemcomitans strain FDAARGOS_948     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1201589..1212998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H05_RS05660 (I6H05_05660) pnp 1202067..1204196 (-) 2130 WP_025298076.1 polyribonucleotide nucleotidyltransferase -
  I6H05_RS05665 (I6H05_05665) nanQ 1204490..1204960 (+) 471 WP_005547536.1 N-acetylneuraminate anomerase -
  I6H05_RS05670 (I6H05_05670) ampD 1205434..1205988 (-) 555 WP_005567973.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  I6H05_RS05675 (I6H05_05675) pilA 1206110..1206562 (+) 453 WP_005586498.1 pilin Machinery gene
  I6H05_RS05680 (I6H05_05680) pilB 1206589..1207998 (+) 1410 WP_019518272.1 GspE/PulE family protein Machinery gene
  I6H05_RS05685 (I6H05_05685) pilC 1207991..1209214 (+) 1224 WP_025298077.1 type II secretion system F family protein Machinery gene
  I6H05_RS05690 (I6H05_05690) - 1209211..1209900 (+) 690 WP_005547547.1 prepilin peptidase -
  I6H05_RS05695 (I6H05_05695) coaE 1209950..1210573 (+) 624 WP_005547548.1 dephospho-CoA kinase -
  I6H05_RS05700 (I6H05_05700) yacG 1210563..1210775 (+) 213 WP_005567966.1 DNA gyrase inhibitor YacG -
  I6H05_RS05705 (I6H05_05705) - 1210775..1211047 (+) 273 WP_005547552.1 GNAT family N-acetyltransferase -
  I6H05_RS05710 (I6H05_05710) - 1211444..1212817 (+) 1374 WP_005547554.1 alanine/glycine:cation symporter family protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 52549.85 Da        Isoelectric Point: 6.2867

>NTDB_id=512182 I6H05_RS05680 WP_019518272.1 1206589..1207998(+) (pilB) [Aggregatibacter actinomycetemcomitans strain FDAARGOS_948]
MQNPMAQGYLIHSQNHGDFTIAPELWLKNQQQQTVLLRYLALPLAENGQTLWLGLDSLTNLSACEAFSFLTGKTIEPVLI
ESQTLKTALQDLSPRVEKVEENQPLFYSALSQEQPTQPYDEPIIRLLNDIFESATAQKASDIHLEPQADCLQTRFRIDGV
LQVQNTVPLSIASRLISRLKLLAKLDISETRLPQDGRFQFKTTFSDTLDFRLSTLATQFGEKAVLRLQQNRPVQLAFGEL
GMTESQQQRFRRALSQPQGLILVTGPTGSGKSISLYTALQYLNTSEKHIMTAEDPIEIQLPGIIQSQVNHPIGLDFSRLL
RTFLRQDPDIIMLGEIRDEESAAMALRAAQTGHLVLSTLHTNDAPSAISRLQQLGIQRHEIDGSLLLVIAQRLVRKRCQK
CGGNATRFCDCHQGYKGRVGVYQFLQPNLQHPQGYETDFADLGQSALEKLKDGTTDLTEIQRVLGQTHD

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=512182 I6H05_RS05680 WP_019518272.1 1206589..1207998(+) (pilB) [Aggregatibacter actinomycetemcomitans strain FDAARGOS_948]
ATGCAAAATCCGATGGCGCAAGGTTATTTGATTCACAGCCAAAATCACGGGGACTTTACCATTGCGCCCGAGCTATGGCT
TAAAAATCAGCAACAACAAACCGTCCTGTTGCGTTATCTCGCCCTGCCCTTAGCAGAAAACGGGCAGACCTTGTGGCTAG
GGTTAGACTCGTTAACTAACCTGAGCGCCTGTGAAGCCTTTTCTTTTCTCACCGGCAAAACCATTGAGCCGGTATTAATT
GAAAGCCAAACGCTAAAAACCGCATTGCAGGATTTATCCCCGCGCGTCGAAAAAGTCGAAGAAAATCAACCGCTCTTTTA
TTCCGCACTGTCACAGGAACAGCCGACACAACCGTATGACGAACCGATTATTCGGCTGTTAAATGATATTTTTGAAAGCG
CGACGGCACAAAAAGCCTCCGATATTCATCTGGAACCGCAAGCAGACTGCCTGCAAACCCGTTTTCGCATTGACGGCGTG
CTGCAGGTGCAAAACACCGTTCCCTTATCCATAGCGAGCCGACTGATTTCTCGTTTAAAATTATTGGCAAAACTGGATAT
TAGCGAAACCCGCCTGCCGCAAGACGGACGCTTTCAGTTTAAAACGACGTTTTCCGACACGCTGGATTTTCGCCTTTCCA
CCCTTGCCACCCAATTCGGTGAAAAAGCGGTCCTGCGTTTGCAACAAAATCGTCCCGTGCAACTGGCATTCGGTGAACTG
GGCATGACGGAATCACAGCAACAGCGTTTTCGTCGTGCCTTGAGCCAACCACAAGGCTTGATTTTAGTCACCGGTCCGAC
AGGCAGCGGCAAAAGTATTTCTTTATATACGGCGTTGCAGTACTTAAATACGTCTGAAAAACACATTATGACGGCGGAAG
ATCCCATTGAAATTCAGCTCCCAGGCATTATTCAAAGCCAAGTGAATCACCCTATCGGCTTGGATTTCAGCCGATTGCTT
CGCACCTTTTTACGCCAAGATCCGGACATTATTATGTTAGGTGAAATTCGTGATGAAGAAAGTGCCGCCATGGCATTACG
CGCCGCGCAAACGGGGCATTTGGTGCTTTCGACGCTACATACCAACGACGCCCCTTCCGCCATTTCCCGCCTGCAACAAC
TCGGCATTCAACGCCATGAAATCGACGGCAGTTTGTTGCTGGTGATCGCCCAACGTTTGGTGCGCAAACGCTGCCAAAAG
TGCGGTGGAAATGCCACGCGTTTTTGCGATTGCCATCAAGGCTACAAAGGGCGTGTCGGGGTCTATCAATTCCTGCAACC
GAATTTACAACATCCGCAGGGCTATGAAACGGATTTCGCCGATTTAGGCCAAAGCGCTTTAGAAAAACTCAAAGACGGCA
CAACAGATTTAACCGAAATCCAACGGGTGTTAGGACAAACTCATGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(130-396)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(31-93)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9JRM9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Haemophilus influenzae Rd KW20

69.427

100

0.697
  pilB Haemophilus influenzae 86-028NP

70.87

98.081

0.695
  pilB Glaesserella parasuis strain SC1401

57.328

98.934

0.567
  pilB Vibrio cholerae strain A1552

40.53

100

0.424
  pilB Acinetobacter baylyi ADP1

39.078

100

0.416
  pilB Legionella pneumophila strain ERS1305867

39.468

100

0.412
  pilB Vibrio parahaemolyticus RIMD 2210633

40.041

100

0.412
  pilB Vibrio campbellii strain DS40M4

39.752

100

0.409
  pilB Acinetobacter baumannii D1279779

38.855

100

0.405
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

39.331

100

0.401
  pilF Neisseria gonorrhoeae MS11

36

100

0.365