Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I5367_RS19180 Genome accession   NZ_CP065539
Coordinates   3898647..3899165 (-) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus amyloliquefaciens strain DGL1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3893647..3904165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5367_RS19150 (I5367_19150) - 3894846..3895226 (-) 381 WP_012118934.1 VOC family protein -
  I5367_RS19155 (I5367_19155) - 3895282..3896220 (-) 939 WP_012118935.1 LacI family DNA-binding transcriptional regulator -
  I5367_RS19160 (I5367_19160) xth 3896283..3897041 (-) 759 WP_012118936.1 exodeoxyribonuclease III -
  I5367_RS19165 (I5367_19165) - 3897038..3897595 (-) 558 WP_012118937.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  I5367_RS19170 (I5367_19170) - 3897592..3898173 (-) 582 WP_012118938.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  I5367_RS19175 (I5367_19175) rpsR 3898364..3898603 (-) 240 WP_004392983.1 30S ribosomal protein S18 -
  I5367_RS19180 (I5367_19180) ssbA 3898647..3899165 (-) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  I5367_RS19185 (I5367_19185) rpsF 3899205..3899492 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  I5367_RS19190 (I5367_19190) ychF 3899604..3900704 (-) 1101 WP_012118940.1 redox-regulated ATPase YchF -
  I5367_RS19195 (I5367_19195) - 3900830..3902833 (-) 2004 WP_012118941.1 molybdopterin-dependent oxidoreductase -
  I5367_RS19200 (I5367_19200) - 3902880..3903086 (-) 207 WP_012118942.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=511800 I5367_RS19180 WP_004392979.1 3898647..3899165(-) (ssbA) [Bacillus amyloliquefaciens strain DGL1]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=511800 I5367_RS19180 WP_004392979.1 3898647..3899165(-) (ssbA) [Bacillus amyloliquefaciens strain DGL1]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAACCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378