Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   SPAF_RS07420 Genome accession   NC_017905
Coordinates   1493199..1494008 (-) Length   269 a.a.
NCBI ID   WP_023918725.1    Uniprot ID   V8BDC2
Organism   Streptococcus parasanguinis FW213     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1488199..1499008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPAF_RS07405 (Spaf_1475) smc 1488366..1491902 (-) 3537 WP_014713652.1 chromosome segregation protein SMC -
  SPAF_RS07410 (Spaf_1476) rnc 1491893..1492594 (-) 702 WP_041826398.1 ribonuclease III -
  SPAF_RS07415 (Spaf_1477) - 1492694..1493080 (-) 387 WP_014713654.1 YbaN family protein -
  SPAF_RS07420 (Spaf_1478) vicX 1493199..1494008 (-) 810 WP_023918725.1 MBL fold metallo-hydrolase Regulator
  SPAF_RS07425 (Spaf_1479) micB 1494016..1495368 (-) 1353 WP_014713656.1 cell wall metabolism sensor histidine kinase VicK Regulator
  SPAF_RS07430 (Spaf_1480) micA 1495361..1496062 (-) 702 WP_014713657.1 response regulator YycF Regulator
  SPAF_RS07435 (Spaf_1481) thrS 1496219..1498162 (-) 1944 WP_014713658.1 threonine--tRNA ligase -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29756.72 Da        Isoelectric Point: 5.9511

>NTDB_id=51140 SPAF_RS07420 WP_023918725.1 1493199..1494008(-) (vicX) [Streptococcus parasanguinis FW213]
MTEEGFKYSILASGSSGNSFYLETPKKKLLIDAGLSGKKITGLLAEIDRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEATWKAMEGTKYLGKVDDAQKHIFEMGKTKTFGDIDIESFGVSHDAAAPQFYRFMKDGKSFVMLTDTGYVSDRLAG
IVADADGYLIESNHDVEILRAGSYAWRLKQRILSDLGHLSNEDGADAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMEN
QLARADLAVGHDFEVLDTSPDTATPLTKI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=51140 SPAF_RS07420 WP_023918725.1 1493199..1494008(-) (vicX) [Streptococcus parasanguinis FW213]
ATGACAGAAGAGGGATTTAAGTATAGTATTTTAGCTTCAGGTTCTAGTGGGAATTCTTTCTACCTTGAGACGCCAAAGAA
AAAACTGCTTATTGATGCAGGGCTATCAGGGAAAAAGATTACGGGACTATTGGCTGAAATTGATCGTAAACCAGAAGACT
TAGATGCCATTTTGATTACGCACGAACACTCAGACCATATCCATGGTGTGGGTGTTTTAGCGCGGAAATATGGCATGGAT
CTATATGCTAATGAAGCGACTTGGAAGGCTATGGAAGGTACCAAGTATCTAGGAAAAGTCGATGATGCTCAAAAGCATAT
CTTTGAAATGGGGAAGACCAAGACATTTGGCGATATCGATATCGAAAGTTTTGGGGTCAGTCACGATGCTGCTGCCCCTC
AATTCTATCGCTTTATGAAGGATGGCAAGAGCTTTGTCATGCTAACGGATACGGGCTATGTGAGTGATCGCTTGGCAGGC
ATCGTCGCGGATGCGGATGGCTATCTGATTGAGTCCAACCATGATGTAGAGATCCTTCGAGCAGGTTCTTATGCTTGGCG
CTTGAAGCAGCGGATCTTGTCAGACCTAGGCCACCTTTCTAACGAAGATGGTGCAGATGCTATGATCCGAACCTTGGGAA
ATCGCACCAAAAAGATTTATCTGGGACATTTGTCAAAAGAGAACAATATCAAAGAATTGGCCCATATGACCATGGAGAAT
CAACTGGCTCGAGCAGATCTAGCTGTTGGCCATGATTTTGAGGTGTTAGATACCTCGCCAGATACCGCGACCCCTTTGAC
GAAGATATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V8BDC2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

78.067

100

0.781

Multiple sequence alignment