Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   STCNRZ1202_RS06645 Genome accession   NZ_CP065506
Coordinates   1271279..1272772 (-) Length   497 a.a.
NCBI ID   WP_180473282.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CNRZ1202     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1266279..1277772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STCNRZ1202_RS06615 (STCNRZ1202_06640) - 1266409..1266786 (+) 378 WP_011226300.1 GntR family transcriptional regulator -
  STCNRZ1202_RS06620 (STCNRZ1202_06645) - 1266791..1267489 (+) 699 WP_164178215.1 ABC transporter ATP-binding protein -
  STCNRZ1202_RS06625 (STCNRZ1202_06650) - 1267501..1268286 (+) 786 WP_014621800.1 hypothetical protein -
  STCNRZ1202_RS06630 (STCNRZ1202_06655) amiF 1268336..1269265 (-) 930 WP_014621801.1 ATP-binding cassette domain-containing protein Regulator
  STCNRZ1202_RS06635 (STCNRZ1202_06660) amiE 1269258..1270343 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  STCNRZ1202_RS06640 (STCNRZ1202_06665) amiD 1270353..1271279 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  STCNRZ1202_RS06645 (STCNRZ1202_06670) amiC 1271279..1272772 (-) 1494 WP_180473282.1 ABC transporter permease Regulator
  STCNRZ1202_RS06650 (STCNRZ1202_06675) amiA 1272834..1274801 (-) 1968 WP_347229573.1 peptide ABC transporter substrate-binding protein Regulator
  STCNRZ1202_RS06655 (STCNRZ1202_06680) - 1275187..1276388 (+) 1202 Protein_1255 ISL3 family transposase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55735.62 Da        Isoelectric Point: 10.0618

>NTDB_id=511389 STCNRZ1202_RS06645 WP_180473282.1 1271279..1272772(-) (amiC) [Streptococcus thermophilus strain CNRZ1202]
MKKYILLRTLRSLLSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKANYENTIYERLGYIDYYDTKELQEKAS
SLDKSVTTKPTKENKAIYQKYVESLGRGWRLHQFKQSKQFYATRDVPVLERVFGFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNGQFPFVHQNFVKMNLGTSYPTYAEQGVLDVITQGQGQTKSSVVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGNDPYTATKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMALFKNTIFDSVSTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHILKNAMVSLVSGIPASIVGVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALSIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=511389 STCNRZ1202_RS06645 WP_180473282.1 1271279..1272772(-) (amiC) [Streptococcus thermophilus strain CNRZ1202]
ATGAAAAAATACATTTTATTGAGAACACTCCGTTCTCTATTGTCAATATTTGTCGTGACGGCTTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAAGACCCAAACTACAACAAGATTGCTAAGACAGCTGATTCTAAGG
CTAACTATGAAAATACAATCTATGAACGTTTGGGTTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAAAGCTAGC
TCCCTTGATAAGTCAGTAACCACTAAGCCAACAAAAGAAAATAAGGCTATCTACCAAAAATATGTGGAAAGTTTAGGACG
TGGTTGGCGTTTGCATCAGTTCAAGCAAAGTAAACAATTCTATGCGACACGTGATGTGCCAGTGCTTGAACGTGTGTTTG
GCTTCTATACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTATATC
CGTATTGAAAATGACCCAGCTATCGGTTGGTCAGTTGTTGGTTCAGGGACTAAGCATAAATATTTGCTTTACTTTAATGG
TCAGTTCCCATTTGTTCACCAAAACTTTGTGAAGATGAACCTTGGTACATCTTACCCAACTTATGCTGAGCAAGGTGTTC
TTGATGTTATTACACAAGGCCAAGGACAGACAAAAAGCTCTGTGGTTAACTTCCCTACTGGTAAGAAAATATCTTCAGTA
GATATCTACTCTCGTACTTATAAATCACCAAGTCAGGCTGACGCTAGAGATCGTTCTTACTATGGAAATGATCCATACAC
AGCTACCAAGAGTCGTTATCAATACCCATCAATGGTGACAAGTTCTGCCATTGCAGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTGGCAATTCCATTGGGATCATACATGGCACTCTTTAAAAACACAATCTTTGATAGTGTGTCAACAGGTGTCTTG
ACTTTCTTGCTTTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTGAGATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCAGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCGATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTTGTTCGCTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCAAATAAACACATTTTAAAAAACGCTATGGTTTCCTTGGTTTCAGGGATCCCAGCATCTATTGTTGG
GGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTACCCTGGTATGGGTAAAATGTTGATCGATTCTGTTCGTG
CTTCTAATAATGCTATGGTCGTTGGGCTGGTATTTATTTTTACAGCTCTCTCCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATTATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus thermophilus LMG 18311

99.598

100

0.996
  amiC Streptococcus thermophilus LMD-9

99.195

100

0.992
  amiC Streptococcus salivarius strain HSISS4

96.982

100

0.97