Detailed information NTG0511388

Bioinformatically predicted

Overview

• Name: amiD
• Type: Regulator
• Locus tag: STCNRZ1202_RS06640
• Genome accession: NZ_CP065506
• Coordinates: 1270353..1271279 (-)
• Length: 308 a.a.
• NCBI ID: WP_002946409.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain CNRZ1202
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1265353..1276279

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
STCNRZ1202_RS06610 (STCNRZ1202_06635)	-	1265431..1266225 (-)	795	WP_087010061.1	HAD family hydrolase	-
STCNRZ1202_RS06615 (STCNRZ1202_06640)	-	1266409..1266786 (+)	378	WP_011226300.1	GntR family transcriptional regulator	-
STCNRZ1202_RS06620 (STCNRZ1202_06645)	-	1266791..1267489 (+)	699	WP_164178215.1	ABC transporter ATP-binding protein	-
STCNRZ1202_RS06625 (STCNRZ1202_06650)	-	1267501..1268286 (+)	786	WP_014621800.1	hypothetical protein	-
STCNRZ1202_RS06630 (STCNRZ1202_06655)	amiF	1268336..1269265 (-)	930	WP_014621801.1	ATP-binding cassette domain-containing protein	Regulator
STCNRZ1202_RS06635 (STCNRZ1202_06660)	amiE	1269258..1270343 (-)	1086	WP_011226304.1	ABC transporter ATP-binding protein	Regulator
STCNRZ1202_RS06640 (STCNRZ1202_06665)	amiD	1270353..1271279 (-)	927	WP_002946409.1	oligopeptide ABC transporter permease OppC	Regulator
STCNRZ1202_RS06645 (STCNRZ1202_06670)	amiC	1271279..1272772 (-)	1494	WP_180473282.1	ABC transporter permease	Regulator
STCNRZ1202_RS06650 (STCNRZ1202_06675)	amiA	1272834..1274801 (-)	1968	WP_347229573.1	peptide ABC transporter substrate-binding protein	Regulator

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34694.85 Da
• Isoelectric Point: 9.7054

>NTDB_id=511388 STCNRZ1202_RS06640 WP_002946409.1 1270353..1271279(-) (amiD) [Streptococcus thermophilus strain CNRZ1202]
MASIDKSKFQFVKRDDFASETIDAPSYSYWKSVMRQFFKKKSTVVMLGILITIILMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDGNGKSLFDSVWFGARNSILIAVIATFLNVIIGLLVGAVWGISKTFDMIMMEIYNIISNIPSLLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRNLGTPTAKIVIKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide

• Length: 927 bp

>NTDB_id=511388 STCNRZ1202_RS06640 WP_002946409.1 1270353..1271279(-) (amiD) [Streptococcus thermophilus strain CNRZ1202]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCGTCTTA
CTCATACTGGAAATCAGTGATGCGTCAATTTTTTAAAAAGAAATCAACAGTTGTAATGTTGGGAATCTTGATTACTATTA
TTTTAATGAGTTTCATCTACCCAATGTTTTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACTGACGGTAATGGTAAGTCTCTATTTGACAGTGTTTGGTTTGGGGC
TCGTAATTCTATCCTTATCGCTGTTATCGCTACCTTCCTGAATGTTATAATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCCTCTCTCCTTGTGGTTATCGTC
TTGACTTACTCATTAGGTGCTGGTTTCTGGAATATGATTTTTGCCATGACCGTAACAGGTTGGATCGGTATTGCCTATAC
AATCCGTATTCAAATCATGCGTTATCGTGATTTGGAGTATAACTTGGCTTCTCGCAATTTGGGAACACCAACGGCTAAGA
TTGTGATTAAAAATATCATGCCACAACTTGTGTCAGTTATTGTAACCATGGCTAGTCAACTTTTGCCAGGATTTATCTCT
TATGAGGCCTTCCTTTCATACTTTGGTTTGGGTCTTCCTGTTACTACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCCTATCTCTTCTGGATTCCATTGACTACCTTGATTCTTGTTTCTCTTGCCCTCTTTATTG
TTGGTCAAAACTTAGCGGATGCTAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterproScan.

• N-terminal TM domain of oligopeptide transport permease C (OppC_N) (28-71)

• Binding-protein-dependent transport system inner membrane component (BPD_transp_1) (125-306)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiD	Streptococcus thermophilus LMG 18311	100	100	1
amiD	Streptococcus thermophilus LMD-9	100	100	1
amiD	Streptococcus salivarius strain HSISS4	96.429	100	0.964