Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   STCNRZ1202_RS06630 Genome accession   NZ_CP065506
Coordinates   1268336..1269265 (-) Length   309 a.a.
NCBI ID   WP_014621801.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CNRZ1202     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1263336..1274265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STCNRZ1202_RS06605 (STCNRZ1202_06630) - 1264620..1265438 (-) 819 WP_259700503.1 Cof-type HAD-IIB family hydrolase -
  STCNRZ1202_RS06610 (STCNRZ1202_06635) - 1265431..1266225 (-) 795 WP_087010061.1 HAD family hydrolase -
  STCNRZ1202_RS06615 (STCNRZ1202_06640) - 1266409..1266786 (+) 378 WP_011226300.1 GntR family transcriptional regulator -
  STCNRZ1202_RS06620 (STCNRZ1202_06645) - 1266791..1267489 (+) 699 WP_164178215.1 ABC transporter ATP-binding protein -
  STCNRZ1202_RS06625 (STCNRZ1202_06650) - 1267501..1268286 (+) 786 WP_014621800.1 hypothetical protein -
  STCNRZ1202_RS06630 (STCNRZ1202_06655) amiF 1268336..1269265 (-) 930 WP_014621801.1 ATP-binding cassette domain-containing protein Regulator
  STCNRZ1202_RS06635 (STCNRZ1202_06660) amiE 1269258..1270343 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  STCNRZ1202_RS06640 (STCNRZ1202_06665) amiD 1270353..1271279 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  STCNRZ1202_RS06645 (STCNRZ1202_06670) amiC 1271279..1272772 (-) 1494 WP_180473282.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35170.30 Da        Isoelectric Point: 6.7823

>NTDB_id=511386 STCNRZ1202_RS06630 WP_014621801.1 1268336..1269265(-) (amiF) [Streptococcus thermophilus strain CNRZ1202]
MPEKLVEVKDVEISFGEGRKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGYLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLYNFHLYKDEEERKAKIKEIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHNYSVDKPEMVEVRPGHFVWGNKTEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=511386 STCNRZ1202_RS06630 WP_014621801.1 1268336..1269265(-) (amiF) [Streptococcus thermophilus strain CNRZ1202]
ATGCCTGAGAAATTAGTTGAAGTAAAAGATGTGGAAATTTCCTTCGGCGAAGGAAGAAAGAAGTTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTCTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACGACTATTGGACGTG
CCATTATCGGTTTAAATGACACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAGATCAATGGATACTTATCTCACTCT
GAGAAAAACGACCTTATCCGTCGTATTCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCGACAGTCGA
TTATATCTTGTCTGAGGGCTTGTACAATTTCCATCTTTATAAAGATGAGGAAGAACGTAAGGCTAAAATCAAGGAAATCA
TCAAAGAAGTAGGACTTCTTGAGGAGCACTTAACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATCGGG
ATTGCACGTTCTTTGGTCATGCAGCCTGATTTGGTTATCGCTGATGAACCAATCTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAGTTTTGAATTTGCTTAAGAAATTCCAAAAAGAGTTGGGGTTAACCTATCTCTTTATCGCTCACGATTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATCTATAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAGCTCTACAAC
AATCCTATCCATCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGATCCAATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACAACTATTCGGTTGATAAACCAGAAATGGTGGAAGTACGCCCAGGTCACTTCGTTT
GGGGTAACAAGACAGAAATTGAGACTTATCGTAAAGAACAAAGTAAGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(26-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

99.676

100

0.997
  amiF Streptococcus thermophilus LMD-9

99.353

100

0.994
  amiF Streptococcus salivarius strain HSISS4

97.735

100

0.977