Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   SPAF_RS03110 Genome accession   NC_017905
Coordinates   594424..595083 (-) Length   219 a.a.
NCBI ID   WP_014712976.1    Uniprot ID   -
Organism   Streptococcus parasanguinis FW213     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 589424..600083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPAF_RS03090 (Spaf_0574) - 590620..591195 (+) 576 WP_003017966.1 YutD-like domain-containing protein -
  SPAF_RS03095 (Spaf_0575) rlmN 591202..592290 (+) 1089 WP_014712975.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  SPAF_RS03100 - 592277..592804 (+) 528 WP_041826245.1 VanZ family protein -
  SPAF_RS03105 (Spaf_0576) trpB 593229..594416 (+) 1188 WP_003017923.1 tryptophan synthase subunit beta -
  SPAF_RS03110 (Spaf_0577) cclA/cilC 594424..595083 (-) 660 WP_014712976.1 A24 family peptidase Machinery gene
  SPAF_RS03115 (Spaf_0578) - 595171..595389 (+) 219 WP_003017930.1 YqgQ family protein -
  SPAF_RS03120 (Spaf_0579) - 595389..595772 (+) 384 WP_013903208.1 rhodanese-like domain-containing protein -
  SPAF_RS03125 (Spaf_0580) - 595821..596546 (-) 726 WP_041826246.1 16S rRNA pseudouridine(516) synthase -
  SPAF_RS03130 (Spaf_0581) typA 596725..598572 (+) 1848 WP_003017941.1 translational GTPase TypA -
  SPAF_RS03135 (Spaf_0582) - 598596..598850 (+) 255 WP_003017963.1 DUF3165 family protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 25038.18 Da        Isoelectric Point: 7.7574

>NTDB_id=51123 SPAF_RS03110 WP_014712976.1 594424..595083(-) (cclA/cilC) [Streptococcus parasanguinis FW213]
MINFYFFTIGTCIASFLGLVVDRFPNQSILAPRSHCDQCQHVLGVWDLIPIISQLLHRFRCRYCHQTYPFWYCLFEVWSG
LLFLACANGFLSLPQLLTLLGAAVLAIYDLRFMEYPLFIWCCLHALVLFLSGGNLLMLVFLLLAIGAHFFFIGMGAGDFL
LLATFSLTFSSTKILILIQIASILGILFFALKKERDQIPFVPCLFLSYHALLLYTMFCR

Nucleotide


Download         Length: 660 bp        

>NTDB_id=51123 SPAF_RS03110 WP_014712976.1 594424..595083(-) (cclA/cilC) [Streptococcus parasanguinis FW213]
ATGATCAACTTTTATTTTTTTACCATCGGTACTTGTATCGCCTCTTTTTTGGGACTAGTTGTCGACCGTTTTCCAAACCA
ATCTATTCTCGCTCCTCGCAGTCATTGTGATCAATGTCAGCACGTCCTTGGAGTTTGGGATCTCATCCCCATTATCTCAC
AACTACTCCATCGTTTTCGCTGTCGCTATTGTCATCAGACCTACCCATTTTGGTACTGCCTTTTTGAGGTCTGGAGTGGC
CTGCTCTTTTTAGCCTGCGCCAATGGTTTCCTTTCTCTGCCTCAACTTCTAACACTACTGGGAGCTGCCGTTTTAGCCAT
CTATGACCTTCGCTTTATGGAATACCCTTTATTCATCTGGTGCTGTCTCCATGCCCTGGTCCTCTTTTTATCCGGTGGTA
ATCTCCTCATGCTGGTCTTTTTACTCCTTGCGATAGGAGCTCACTTTTTCTTTATCGGAATGGGAGCAGGAGATTTTCTC
TTACTCGCCACATTCTCGCTGACCTTTTCCTCTACCAAGATCCTCATTCTCATTCAGATCGCATCCATCTTAGGCATTCT
CTTCTTTGCTCTAAAAAAAGAAAGAGACCAGATTCCCTTTGTACCCTGTCTCTTTCTCAGTTATCACGCTTTACTGCTTT
ATACGATGTTTTGCAGATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

55.072

94.521

0.521
  cclA/cilC Streptococcus mitis NCTC 12261

55.072

94.521

0.521
  cclA/cilC Streptococcus pneumoniae TIGR4

54.589

94.521

0.516
  cclA/cilC Streptococcus pneumoniae Rx1

54.589

94.521

0.516
  cclA/cilC Streptococcus pneumoniae D39

54.589

94.521

0.516
  cclA/cilC Streptococcus pneumoniae R6

54.589

94.521

0.516

Multiple sequence alignment