Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYF   Type   Machinery gene
Locus tag   STCNRZ385_RS08965 Genome accession   NZ_CP065495
Coordinates   1727952..1728389 (-) Length   145 a.a.
NCBI ID   WP_011681686.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CNRZ385     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1722952..1733389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STCNRZ385_RS08925 (STCNRZ385_08910) - 1723016..1723678 (-) 663 WP_084826165.1 type II CAAX endopeptidase family protein -
  STCNRZ385_RS08930 (STCNRZ385_08915) - 1723775..1724218 (-) 444 WP_041829335.1 hypothetical protein -
  STCNRZ385_RS08935 - 1724292..1724630 (-) 339 WP_228024408.1 CPBP family intramembrane glutamic endopeptidase -
  STCNRZ385_RS08940 - 1724674..1724949 (-) 276 WP_084830830.1 CAAX protease -
  STCNRZ385_RS08945 (STCNRZ385_08925) - 1724961..1725158 (-) 198 WP_084826167.1 helix-turn-helix transcriptional regulator -
  STCNRZ385_RS08950 (STCNRZ385_08930) - 1725407..1726600 (-) 1194 WP_084826168.1 acetate kinase -
  STCNRZ385_RS08955 (STCNRZ385_08935) comYH 1726656..1727612 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  STCNRZ385_RS08960 (STCNRZ385_08940) comGG 1727657..1727974 (-) 318 WP_002952035.1 competence type IV pilus minor pilin ComGG -
  STCNRZ385_RS08965 (STCNRZ385_08945) comYF 1727952..1728389 (-) 438 WP_011681686.1 competence type IV pilus minor pilin ComGF Machinery gene
  STCNRZ385_RS08970 (STCNRZ385_08950) comGE 1728373..1728666 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  STCNRZ385_RS08975 (STCNRZ385_08955) comYD 1728638..1729066 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  STCNRZ385_RS08980 (STCNRZ385_08960) comYC 1729026..1729352 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  STCNRZ385_RS08985 (STCNRZ385_08965) comYB 1729349..1730449 (-) 1101 WP_116920398.1 competence type IV pilus assembly protein ComGB Machinery gene
  STCNRZ385_RS08990 (STCNRZ385_08970) comGA/cglA/cilD 1730331..1731272 (-) 942 WP_180483385.1 competence type IV pilus ATPase ComGA Machinery gene
  STCNRZ385_RS08995 (STCNRZ385_08975) - 1731353..1731715 (-) 363 WP_014608746.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16375.85 Da        Isoelectric Point: 8.4500

>NTDB_id=511044 STCNRZ385_RS08965 WP_011681686.1 1727952..1728389(-) (comYF) [Streptococcus thermophilus strain CNRZ385]
MYLSSKLRAFTLLECLVALLVIAGSVQVYQGLTTVLVSNVKQVRQQENQDWLLFVQQMEAELEGCQLVKVEGNKLYVKQD
NQDLAFGLSSASDFRKTNADGRGYQPMLFDVKSSKVSQKNQIVTIQVTLKNELQRSFVYAFEKTG

Nucleotide


Download         Length: 438 bp        

>NTDB_id=511044 STCNRZ385_RS08965 WP_011681686.1 1727952..1728389(-) (comYF) [Streptococcus thermophilus strain CNRZ385]
ATGTATCTAAGCAGTAAGCTGCGTGCCTTTACCCTCTTGGAATGTCTAGTGGCCTTGTTGGTCATTGCTGGCTCAGTTCA
AGTTTATCAAGGGTTAACCACTGTACTTGTGAGTAATGTTAAGCAGGTAAGACAACAAGAAAACCAAGATTGGCTTCTAT
TTGTTCAACAAATGGAGGCAGAATTAGAAGGATGTCAGTTGGTCAAGGTAGAGGGGAACAAACTCTATGTCAAGCAGGAT
AATCAAGACTTGGCTTTTGGTCTTTCAAGTGCCTCTGATTTTCGAAAAACAAATGCTGATGGTCGAGGTTATCAACCAAT
GCTTTTCGATGTCAAATCTAGTAAGGTAAGTCAAAAGAACCAGATAGTTACCATCCAAGTGACTCTTAAAAATGAACTAC
AAAGGAGTTTTGTTTATGCTTTTGAAAAAACAGGTTAG

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(39-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYF Streptococcus mutans UA140

58.156

97.241

0.566
  comYF Streptococcus mutans UA159

57.447

97.241

0.559
  comGF/cglF Streptococcus pneumoniae D39

49.286

96.552

0.476
  comGF/cglF Streptococcus pneumoniae Rx1

49.286

96.552

0.476
  comGF/cglF Streptococcus pneumoniae R6

49.286

96.552

0.476
  comGF/cglF Streptococcus pneumoniae TIGR4

49.286

96.552

0.476
  comGF/cglF Streptococcus mitis NCTC 12261

47.518

97.241

0.462
  comGF/cglF Streptococcus mitis SK321

46.809

97.241

0.455
  comGF Lactococcus lactis subsp. cremoris KW2

45.324

95.862

0.434