Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   STCNRZ385_RS06900 Genome accession   NZ_CP065495
Coordinates   1336304..1337797 (-) Length   497 a.a.
NCBI ID   WP_180483348.1    Uniprot ID   A0AAU9H868
Organism   Streptococcus thermophilus strain CNRZ385     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1331304..1342797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STCNRZ385_RS06870 (STCNRZ385_06875) - 1331434..1331811 (+) 378 WP_011681413.1 GntR family transcriptional regulator -
  STCNRZ385_RS06875 (STCNRZ385_06880) - 1331816..1332514 (+) 699 WP_011226301.1 ABC transporter ATP-binding protein -
  STCNRZ385_RS06880 (STCNRZ385_06885) - 1332526..1333311 (+) 786 WP_011681414.1 hypothetical protein -
  STCNRZ385_RS06885 (STCNRZ385_06890) amiF 1333361..1334290 (-) 930 WP_082245810.1 ATP-binding cassette domain-containing protein Regulator
  STCNRZ385_RS06890 (STCNRZ385_06895) amiE 1334283..1335368 (-) 1086 WP_084828981.1 ABC transporter ATP-binding protein Regulator
  STCNRZ385_RS06895 (STCNRZ385_06900) amiD 1335378..1336304 (-) 927 WP_084828982.1 oligopeptide ABC transporter permease OppC Regulator
  STCNRZ385_RS06900 (STCNRZ385_06905) amiC 1336304..1337797 (-) 1494 WP_180483348.1 ABC transporter permease Regulator
  STCNRZ385_RS06905 (STCNRZ385_06910) amiA 1337859..1339826 (-) 1968 WP_180483350.1 peptide ABC transporter substrate-binding protein Regulator
  STCNRZ385_RS06910 (STCNRZ385_06915) - 1340030..1340220 (-) 191 Protein_1304 IS3 family transposase -
  STCNRZ385_RS06915 - 1340214..1340624 (-) 411 Protein_1305 ATP-binding cassette domain-containing protein -
  STCNRZ385_RS06920 - 1340656..1340969 (-) 314 Protein_1306 TatD family hydrolase -
  STCNRZ385_RS06925 (STCNRZ385_06925) - 1341317..1342522 (+) 1206 WP_011681420.1 OFA family MFS transporter -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55683.54 Da        Isoelectric Point: 10.0972

>NTDB_id=511031 STCNRZ385_RS06900 WP_180483348.1 1336304..1337797(-) (amiC) [Streptococcus thermophilus strain CNRZ385]
MKKYILLRTLRSLLSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKANYENTIYERLGYIDYYDTKELQEKAS
SLDKSVTTKPTKENKAIYQKYVDSLGRGWRLHQFKQSKQFYATRDVPVLERVFGFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNGQFPFVHQNFVKMNLGTSYPTYAGQGVLDVITQGQGQTKSSVVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGNDPYTATKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMALFKNTLFDSVSTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHILKNAMVSLVSGFPASIVGVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALSIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=511031 STCNRZ385_RS06900 WP_180483348.1 1336304..1337797(-) (amiC) [Streptococcus thermophilus strain CNRZ385]
ATGAAAAAATACATTTTATTGAGAACACTCCGTTCTCTATTGTCAATATTTGTCGTGACGGCTTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAAGACCCGAACTACAACAAGATTGCTAAGACAGCTGATTCTAAGG
CTAACTATGAAAATACAATCTATGAACGCTTGGGTTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAAAGCTAGC
TCCCTTGATAAGTCAGTAACCACTAAGCCAACAAAAGAAAATAAGGCTATCTACCAAAAATATGTGGATAGTTTAGGACG
TGGTTGGCGTTTGCATCAGTTCAAGCAAAGTAAACAATTCTATGCGACACGTGATGTGCCAGTGCTTGAACGTGTGTTTG
GCTTCTATACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTATATC
CGTATTGAAAATGACCCAGCTATCGGTTGGTCAGTTGTTGGTTCAGGGACTAAGCATAAATATTTGCTTTACTTTAATGG
TCAGTTCCCATTTGTTCACCAAAATTTTGTGAAGATGAATCTTGGAACTTCATACCCAACTTATGCTGGGCAAGGTGTTC
TTGATGTTATTACACAAGGCCAAGGACAGACAAAAAGCTCTGTGGTTAACTTCCCTACTGGTAAGAAAATATCTTCAGTA
GATATCTACTCTCGTACTTATAAATCACCAAGTCAGGCTGACGCTAGAGATCGTTCTTACTATGGAAATGATCCATACAC
AGCTACCAAGAGTCGTTATCAATACCCATCAATGGTGACAAGTTCTGCCATTGCAGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTGGCAATTCCATTGGGATCATACATGGCACTCTTTAAAAACACACTCTTTGATAGTGTGTCAACAGGTGTCTTG
ACTTTCTTGCTTTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTGAGATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCAGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCGATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTCGTTCGTTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCAAATAAACACATTTTAAAAAACGCTATGGTTTCCTTGGTTTCAGGGTTCCCAGCATCTATTGTTGG
GGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTACCCTGGTATGGGTAAAATGTTGATCGATTCTGTTCGTG
CTTCTAATAATGCTATGGTCGTTGGGCTGGTATTTATTTTTACAGCTCTCTCCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATTATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus thermophilus LMD-9

99.598

100

0.996
  amiC Streptococcus thermophilus LMG 18311

99.195

100

0.992
  amiC Streptococcus salivarius strain HSISS4

96.982

100

0.97