Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   STCNRZ385_RS06890 Genome accession   NZ_CP065495
Coordinates   1334283..1335368 (-) Length   361 a.a.
NCBI ID   WP_084828981.1    Uniprot ID   A0A0E2Q0D9
Organism   Streptococcus thermophilus strain CNRZ385     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1329283..1340368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STCNRZ385_RS06860 (STCNRZ385_06865) - 1329647..1330462 (-) 816 WP_024010001.1 Cof-type HAD-IIB family hydrolase -
  STCNRZ385_RS06865 (STCNRZ385_06870) - 1330455..1331249 (-) 795 WP_011681412.1 HAD-IIB family hydrolase -
  STCNRZ385_RS06870 (STCNRZ385_06875) - 1331434..1331811 (+) 378 WP_011681413.1 GntR family transcriptional regulator -
  STCNRZ385_RS06875 (STCNRZ385_06880) - 1331816..1332514 (+) 699 WP_011226301.1 ABC transporter ATP-binding protein -
  STCNRZ385_RS06880 (STCNRZ385_06885) - 1332526..1333311 (+) 786 WP_011681414.1 hypothetical protein -
  STCNRZ385_RS06885 (STCNRZ385_06890) amiF 1333361..1334290 (-) 930 WP_082245810.1 ATP-binding cassette domain-containing protein Regulator
  STCNRZ385_RS06890 (STCNRZ385_06895) amiE 1334283..1335368 (-) 1086 WP_084828981.1 ABC transporter ATP-binding protein Regulator
  STCNRZ385_RS06895 (STCNRZ385_06900) amiD 1335378..1336304 (-) 927 WP_084828982.1 oligopeptide ABC transporter permease OppC Regulator
  STCNRZ385_RS06900 (STCNRZ385_06905) amiC 1336304..1337797 (-) 1494 WP_180483348.1 ABC transporter permease Regulator
  STCNRZ385_RS06905 (STCNRZ385_06910) amiA 1337859..1339826 (-) 1968 WP_180483350.1 peptide ABC transporter substrate-binding protein Regulator
  STCNRZ385_RS06910 (STCNRZ385_06915) - 1340030..1340220 (-) 191 Protein_1304 IS3 family transposase -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 39806.59 Da        Isoelectric Point: 4.8014

>NTDB_id=511029 STCNRZ385_RS06890 WP_084828981.1 1334283..1335368(-) (amiE) [Streptococcus thermophilus strain CNRZ385]
MTENKNVILSARDIVVEFDVRDRVLTAIRGVSLDLVEGEVLALVGESGSGKSVLTKTFTGMLEENGRVASGSIDYRGKDL
TKFKSHQDWAAIRGAKIATIFQDPMTSLNPIKTIGSQIIEVIVKHQGKTAKEAKKMAIDYMDKVGIPDAEKRFNEYPFQY
SGGMRQRIVIAIALACRPDVLICDEPTTALDVTIQAQIIDLLKSLKEEYGFSVIFITHDLGVVASIADKVAVMYAGEIIE
YATVEEIFYEPCHPYTWSLLSSLPQLAGDNGKLFSIPGTPPSLYTPVVGDAFALRSDYALQIDFEEKAPQFQVSDTHWAK
TWLLHEDAPKVDKPAVIQNLHEKILANMGFAHLGDEEEGNA

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=511029 STCNRZ385_RS06890 WP_084828981.1 1334283..1335368(-) (amiE) [Streptococcus thermophilus strain CNRZ385]
ATGACAGAAAATAAAAATGTAATATTATCGGCTCGCGATATCGTCGTGGAATTTGACGTTCGTGACCGTGTTTTGACAGC
TATTCGAGGGGTTTCTCTTGATTTAGTTGAAGGTGAAGTTTTAGCCTTGGTTGGTGAGTCTGGTTCAGGGAAATCAGTCT
TGACTAAAACTTTTACAGGGATGCTGGAAGAAAATGGTCGTGTAGCTAGCGGATCTATCGACTACCGTGGCAAAGACTTG
ACTAAATTTAAGAGTCACCAAGATTGGGCAGCTATCCGTGGAGCTAAGATTGCAACTATTTTCCAAGATCCAATGACCAG
TCTTAACCCAATTAAGACTATCGGAAGTCAAATTATTGAAGTTATTGTTAAGCACCAAGGGAAAACAGCCAAGGAAGCTA
AAAAAATGGCAATTGATTACATGGACAAGGTTGGTATTCCAGATGCTGAAAAACGTTTCAATGAATATCCTTTCCAATAC
TCTGGTGGGATGCGTCAACGTATCGTTATTGCCATTGCCTTGGCTTGTCGTCCTGATGTCCTTATCTGTGACGAACCAAC
AACTGCCCTTGATGTGACCATTCAAGCTCAAATCATTGACCTCTTGAAATCACTCAAAGAGGAGTATGGTTTCTCGGTCA
TTTTCATTACCCATGACCTTGGCGTCGTAGCAAGTATCGCGGACAAGGTTGCTGTCATGTATGCTGGCGAAATCATTGAA
TACGCAACTGTTGAGGAAATTTTCTATGAGCCTTGTCATCCATACACGTGGAGCTTGCTTTCAAGTCTGCCACAATTGGC
TGGTGATAATGGAAAACTCTTCTCAATTCCAGGGACGCCACCATCACTTTATACACCAGTTGTTGGGGATGCCTTTGCCT
TGCGTTCAGATTATGCTTTGCAGATTGATTTTGAGGAAAAAGCACCACAATTCCAAGTTTCAGATACTCACTGGGCTAAG
ACCTGGCTCTTACATGAGGATGCGCCAAAAGTTGATAAACCTGCGGTTATCCAAAATCTACATGAAAAAATCCTAGCCAA
TATGGGATTTGCACATTTAGGAGATGAGGAGGAAGGCAATGCCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-300)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E2Q0D9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

99.723

100

0.997
  amiE Streptococcus thermophilus LMD-9

99.723

100

0.997
  amiE Streptococcus salivarius strain HSISS4

96.676

100

0.967
  oppD Streptococcus mutans UA159

54.441

96.676

0.526