Detailed information NTG0510747

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: STCNRZ302_RS08875
• Genome accession: NZ_CP065489
• Coordinates: 1716639..1717739 (-)
• Length: 366 a.a.
• NCBI ID: WP_120764773.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain CNRZ302
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1711639..1722739

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
STCNRZ302_RS08830	-	1711964..1712239 (-)	276	WP_232086463.1	CAAX protease	-
STCNRZ302_RS08835 (STCNRZ302_08745)	-	1712251..1712448 (-)	198	WP_014727723.1	helix-turn-helix transcriptional regulator	-
STCNRZ302_RS08840 (STCNRZ302_08750)	-	1712697..1713890 (-)	1194	WP_179970807.1	acetate kinase	-
STCNRZ302_RS08845 (STCNRZ302_08755)	comYH	1713946..1714902 (-)	957	WP_084831205.1	class I SAM-dependent methyltransferase	Machinery gene
STCNRZ302_RS08850 (STCNRZ302_08760)	comGG	1714947..1715264 (-)	318	WP_082309152.1	competence type IV pilus minor pilin ComGG	-
STCNRZ302_RS08855 (STCNRZ302_08765)	comYF	1715242..1715679 (-)	438	WP_082309153.1	competence type IV pilus minor pilin ComGF	Machinery gene
STCNRZ302_RS08860 (STCNRZ302_08770)	comGE	1715663..1715956 (-)	294	WP_082309154.1	competence type IV pilus minor pilin ComGE	-
STCNRZ302_RS08865 (STCNRZ302_08775)	comGD	1715928..1716356 (-)	429	WP_253269448.1	competence type IV pilus minor pilin ComGD	-
STCNRZ302_RS08870 (STCNRZ302_08780)	comYC	1716316..1716642 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
STCNRZ302_RS08875 (STCNRZ302_08785)	comYB	1716639..1717739 (-)	1101	WP_120764773.1	competence type IV pilus assembly protein ComGB	Machinery gene
STCNRZ302_RS08880 (STCNRZ302_08790)	comGA/cglA/cilD	1717621..1718562 (-)	942	WP_014608745.1	competence type IV pilus ATPase ComGA	Machinery gene
STCNRZ302_RS08885 (STCNRZ302_08795)	-	1718643..1719005 (-)	363	WP_014608746.1	DUF1033 family protein	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 41876.03 Da
• Isoelectric Point: 10.1377

>NTDB_id=510747 STCNRZ302_RS08875 WP_120764773.1 1716639..1717739(-) (comYB) [Streptococcus thermophilus strain CNRZ302]
MPEKISKTIRRPTGISSWKVWLNKDVSLRGISKGKKLKISQQVKVIQLFKQLLKAGFTLTEIVAFLERSHLLKETSLSLM
KESLIRGDRLYQMLALVGFSDNIVTQISLADKHGNLLGSLTKIETYMLRMTKVRKKLMEVATYPILLLGFLILIMLGLKN
YLLPQLLEGDGKNNWAVQLVQIFPQLFFVSLCGLLVLGLILYLWVKRQSALVFYRRMAKIPFIGQTVRLYTTAYYAREWG
NLLGQGVDLLDLVALMQEQKSKLFRELGADLEEALMLGQSFPERIASHPFFTKELSLIIAYGEANARLGYELEVYAEEVW
QNFFNRLNKATTFVQPLIFVIVAVVIVMIYVAMLLPMYQNMEGMMS

Nucleotide

• Length: 1101 bp

>NTDB_id=510747 STCNRZ302_RS08875 WP_120764773.1 1716639..1717739(-) (comYB) [Streptococcus thermophilus strain CNRZ302]
TTGCCAGAGAAAATTTCCAAAACCATTCGTCGACCAACTGGAATCAGCAGTTGGAAGGTTTGGTTAAACAAGGATGTCTC
ACTGAGAGGGATATCCAAGGGGAAAAAATTAAAGATTAGTCAGCAAGTTAAGGTTATCCAGCTCTTCAAACAACTTTTAA
AGGCCGGTTTTACCTTAACTGAAATCGTAGCCTTTTTGGAGCGAAGTCACTTGCTGAAAGAAACATCCTTGTCCCTTATG
AAAGAGAGTTTAATACGCGGTGATAGGTTGTATCAGATGTTAGCGTTAGTGGGGTTTTCGGACAATATTGTTACTCAGAT
TTCTCTTGCTGACAAGCACGGTAATCTTCTAGGGAGTCTAACAAAGATTGAAACCTATATGCTTCGTATGACAAAGGTTC
GCAAGAAACTCATGGAGGTGGCGACTTATCCCATACTACTTCTGGGTTTTCTGATTCTGATTATGCTAGGACTTAAAAAT
TATCTTCTACCCCAACTCTTAGAGGGTGATGGTAAGAATAATTGGGCTGTACAGTTGGTTCAAATTTTTCCCCAGCTTTT
TTTTGTGAGTTTGTGTGGACTCCTTGTGTTGGGTTTAATTCTCTATCTATGGGTGAAACGACAGTCAGCCCTTGTTTTTT
ATAGGCGAATGGCCAAAATCCCTTTTATTGGTCAGACAGTAAGGCTTTACACGACCGCCTATTATGCTAGGGAATGGGGA
AATTTATTAGGTCAAGGCGTTGATTTGCTAGATTTGGTGGCTCTTATGCAAGAGCAAAAGTCTAAACTCTTCCGTGAGCT
GGGAGCCGATTTGGAAGAAGCCCTGATGCTGGGACAGAGTTTTCCTGAACGTATTGCCAGTCATCCGTTTTTTACTAAGG
AGCTCTCACTAATTATTGCTTATGGGGAGGCCAATGCGAGGTTGGGCTATGAGTTGGAAGTTTATGCCGAGGAGGTTTGG
CAAAACTTCTTTAACCGTCTTAATAAGGCAACAACCTTTGTGCAACCCCTCATTTTTGTTATTGTTGCAGTTGTGATTGT
AATGATCTATGTAGCCATGCTATTACCAATGTATCAAAATATGGAAGGAATGATGTCATGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (236-356)

• Type II secretion system (T2SS), protein F (T2SSF) (51-164)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus mutans UA140	54.678	93.443	0.511
comYB	Streptococcus mutans UA159	54.678	93.443	0.511
comYB	Streptococcus gordonii str. Challis substr. CH1	51.17	93.443	0.478
comGB/cglB	Streptococcus mitis NCTC 12261	50.453	90.437	0.456
comGB/cglB	Streptococcus mitis SK321	49.697	90.164	0.448
comGB/cglB	Streptococcus pneumoniae Rx1	49.695	89.617	0.445
comGB/cglB	Streptococcus pneumoniae D39	49.695	89.617	0.445
comGB/cglB	Streptococcus pneumoniae R6	49.695	89.617	0.445
comGB/cglB	Streptococcus pneumoniae TIGR4	49.695	89.617	0.445
comGB	Lactococcus lactis subsp. cremoris KW2	45.758	90.164	0.413