Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   STAVA1121_RS06885 Genome accession   NZ_CP065488
Coordinates   1294460..1296373 (-) Length   637 a.a.
NCBI ID   WP_347131149.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain AVA1121     
Function   internalize XIP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1296781..1303874 1294460..1296373 flank 408


Gene organization within MGE regions


Location: 1294460..1303874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAVA1121_RS06885 (STAVA1121_06800) amiA 1294460..1296373 (-) 1914 WP_347131149.1 peptide ABC transporter substrate-binding protein Regulator
  STAVA1121_RS06890 (STAVA1121_06805) - 1296781..1298030 (+) 1250 Protein_1302 ISL3 family transposase -
  STAVA1121_RS06895 (STAVA1121_06810) amiA3 1298085..1300058 (-) 1974 WP_180477094.1 peptide ABC transporter substrate-binding protein Regulator
  STAVA1121_RS06900 (STAVA1121_06815) - 1300292..1300482 (-) 191 Protein_1304 IS3 family transposase -
  STAVA1121_RS06905 (STAVA1121_06820) amiF 1300473..1300643 (-) 171 WP_347131150.1 hypothetical protein Regulator
  STAVA1121_RS06910 - 1300659..1301231 (-) 573 Protein_1306 TatD family hydrolase -
  STAVA1121_RS06915 (STAVA1121_06835) - 1301576..1302781 (+) 1206 WP_263604435.1 OFA family MFS transporter -
  STAVA1121_RS06920 (STAVA1121_06840) - 1302828..1303874 (-) 1047 Protein_1308 IS3 family transposase -

Sequence

Protein


Download         Length: 637 a.a.        Molecular weight: 69794.33 Da        Isoelectric Point: 4.9145

>NTDB_id=510675 STAVA1121_RS06885 WP_347131149.1 1294460..1296373(-) (amiA) [Streptococcus thermophilus strain AVA1121]
MLAACSSKSSTSGTTYSNIYGSDPETLDYITSIMGGTKAVLTNGVDGLMEADKYGNLVPSVAEDWSVSKDGLTYTYKIRK
GIKWYTSEGEEYANVTAKDFVTGLKHAADAKSGALYLVQDSIAGLSDYLSGANKDFSNVGVKAIDDYTLQYTLKKQEPYW
NSKTTYGVLFPVNEDFLKNKGKDFGKSTDPTSILYNGPFLLKSLTAKSSIELTKNENYWDKKNVHFDSIKFSYSDGSDLE
SIERSFSDGALSIARVFPTSSNYASVEKKYKDNIFYTEPGASTSVIGVNIDRQSYKFSAKKTDAEKTSTKKALLNKDFRQ
SINFAIDRTAYQSQVNGKDGAALALRNLFVPYDFVSAGDKTFGDLVTEKMSSYGDEWSGVNFADGQDGLYNAKKAKTEFA
KAKEALQGEGVQFPVHLDLPVDQSSKLSVAQAQSLKQTIEKSLGSENVVIDINQMSSDDMQNATSNAANAAAEDWDISNG
VGWGPDYQDPSTYLDILKTTSSENTKAFNGYDDPNNAAAAQVGLKDYDALLDSAASETTDINARYDRYAQAQAWLEDSSL
IIPLTVSNGAAPVISRLTPFTGASIQVGDKGSSYVKYVKSQEKVVTKKEYEQSREKWLKEKKASNENAQKDLEKHVK

Nucleotide


Download         Length: 1914 bp        

>NTDB_id=510675 STAVA1121_RS06885 WP_347131149.1 1294460..1296373(-) (amiA) [Streptococcus thermophilus strain AVA1121]
ATGTTAGCGGCTTGTTCTTCTAAGTCAAGTACTAGTGGAACGACTTATAGTAATATTTATGGCTCAGATCCAGAAACCTT
GGATTATATTACATCAATTATGGGAGGGACAAAAGCTGTTTTGACTAATGGTGTAGATGGTCTTATGGAAGCGGACAAAT
ATGGTAATCTTGTTCCATCAGTAGCTGAAGACTGGTCTGTGTCTAAAGATGGTCTTACTTATACCTATAAAATTCGTAAA
GGGATCAAATGGTATACTTCTGAAGGTGAAGAGTACGCTAATGTTACTGCTAAGGACTTTGTAACGGGTCTTAAGCATGC
CGCTGATGCCAAATCTGGAGCCCTTTATTTGGTACAAGATTCTATTGCTGGATTGTCTGACTACCTTTCTGGTGCCAATA
AAGATTTTTCAAATGTTGGCGTTAAAGCAATAGACGATTACACTCTGCAATACACACTAAAAAAACAGGAACCATACTGG
AACTCTAAGACAACCTATGGTGTGCTCTTCCCAGTTAACGAAGACTTTCTTAAGAACAAAGGGAAAGATTTTGGTAAGTC
AACAGACCCAACCTCTATCCTATATAACGGTCCTTTCCTTCTTAAATCTTTGACAGCTAAATCATCTATCGAGTTGACTA
AGAATGAGAATTATTGGGATAAGAAAAACGTGCATTTTGACTCTATCAAATTCTCATATTCTGATGGATCGGATCTAGAA
TCAATAGAACGTAGTTTCTCTGACGGCGCTCTCAGCATTGCACGTGTCTTCCCTACGAGTTCAAACTATGCATCGGTAGA
AAAAAAATATAAAGATAATATTTTTTACACAGAACCAGGTGCATCTACATCGGTTATTGGTGTAAACATTGACCGCCAAA
GCTATAAATTCTCAGCTAAGAAGACAGATGCTGAAAAGACATCAACTAAGAAGGCTCTTCTAAACAAAGATTTTCGTCAA
TCAATCAACTTCGCTATTGATCGTACAGCCTATCAATCACAAGTAAACGGTAAAGATGGCGCAGCTCTTGCTCTACGTAA
CCTTTTTGTTCCTTATGATTTTGTCAGTGCAGGTGATAAGACCTTTGGTGATCTTGTGACAGAAAAAATGAGCTCTTATG
GTGATGAGTGGTCTGGTGTTAACTTTGCAGATGGTCAAGACGGTCTCTACAATGCTAAAAAAGCTAAGACTGAGTTTGCC
AAAGCCAAAGAGGCTCTTCAAGGAGAAGGGGTACAATTCCCAGTTCACTTAGACCTTCCAGTTGATCAAAGTTCTAAACT
TAGTGTTGCTCAAGCTCAATCTTTGAAACAAACCATTGAAAAATCATTGGGTAGCGAAAATGTTGTTATAGATATTAACC
AAATGTCATCTGATGATATGCAAAATGCGACTAGTAATGCGGCAAATGCTGCAGCAGAAGACTGGGATATTTCTAACGGT
GTGGGTTGGGGTCCAGATTATCAAGATCCATCAACTTATCTTGATATCTTAAAAACAACATCAAGTGAAAATACCAAGGC
TTTCAATGGTTATGATGATCCAAACAATGCAGCAGCAGCCCAAGTAGGTCTTAAGGATTATGATGCCTTGCTTGATTCAG
CAGCTTCAGAAACAACAGACATCAACGCTCGTTACGACCGTTATGCTCAAGCCCAAGCTTGGTTGGAAGATAGCTCTCTT
ATCATTCCATTGACTGTTAGTAACGGTGCAGCACCAGTTATCTCACGTTTGACACCATTTACGGGTGCTAGCATACAGGT
GGGTGATAAGGGCTCATCCTACGTCAAATATGTGAAATCACAAGAAAAAGTAGTTACTAAGAAAGAATATGAACAAAGTC
GTGAAAAATGGCTTAAAGAAAAGAAAGCATCTAACGAAAATGCTCAAAAAGATCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(57-502)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

89.953

100

0.9
  amiA3 Streptococcus thermophilus LMD-9

87.48

100

0.878
  amiA3 Streptococcus thermophilus LMG 18311

87.167

100

0.874