Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   STAVA1121_RS06905 Genome accession   NZ_CP065488
Coordinates   1300473..1300643 (-) Length   56 a.a.
NCBI ID   WP_347131150.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain AVA1121     
Function   internalize XIP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1296781..1303874 1300473..1300643 within 0


Gene organization within MGE regions


Location: 1296781..1303874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAVA1121_RS06890 (STAVA1121_06805) - 1296781..1298030 (+) 1250 Protein_1302 ISL3 family transposase -
  STAVA1121_RS06895 (STAVA1121_06810) amiA3 1298085..1300058 (-) 1974 WP_180477094.1 peptide ABC transporter substrate-binding protein Regulator
  STAVA1121_RS06900 (STAVA1121_06815) - 1300292..1300482 (-) 191 Protein_1304 IS3 family transposase -
  STAVA1121_RS06905 (STAVA1121_06820) amiF 1300473..1300643 (-) 171 WP_347131150.1 hypothetical protein Regulator
  STAVA1121_RS06910 - 1300659..1301231 (-) 573 Protein_1306 TatD family hydrolase -
  STAVA1121_RS06915 (STAVA1121_06835) - 1301576..1302781 (+) 1206 WP_263604435.1 OFA family MFS transporter -
  STAVA1121_RS06920 (STAVA1121_06840) - 1302828..1303874 (-) 1047 Protein_1308 IS3 family transposase -

Sequence

Protein


Download         Length: 56 a.a.        Molecular weight: 6423.36 Da        Isoelectric Point: 4.9190

>NTDB_id=510677 STAVA1121_RS06905 WP_347131150.1 1300473..1300643(-) (amiF) [Streptococcus thermophilus strain AVA1121]
MGVAETEELYNNPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMV

Nucleotide


Download         Length: 171 bp        

>NTDB_id=510677 STAVA1121_RS06905 WP_347131150.1 1300473..1300643(-) (amiF) [Streptococcus thermophilus strain AVA1121]
GTGGGAGTTGCTGAGACAGAAGAGCTCTACAACAATCCTATCCATCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTAT
TCCAGATCCAATCTTGGAACGTAAGAAAGTCTTGAAGGTTTATGATCCAAACCAACACGACTATTCGGTTGATAAACCAG
AAATGGTATGA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(4-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

100

96.429

0.964
  amiF Streptococcus salivarius strain HSISS4

100

96.429

0.964
  amiF Streptococcus thermophilus LMG 18311

100

96.429

0.964