Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   Q7C_RS08615 Genome accession   NC_017856
Coordinates   1795213..1796274 (-) Length   353 a.a.
NCBI ID   WP_041366681.1    Uniprot ID   -
Organism   Methylophaga frappieri     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1790213..1801274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7C_RS08590 (Q7C_1784) aroK 1790725..1791261 (-) 537 WP_202946533.1 shikimate kinase AroK -
  Q7C_RS08595 (Q7C_1785) pilQ 1791355..1793472 (-) 2118 WP_014704346.1 type IV pilus secretin PilQ -
  Q7C_RS08600 (Q7C_1786) - 1793509..1794066 (-) 558 WP_014704347.1 pilus assembly protein PilP -
  Q7C_RS08605 (Q7C_1787) - 1794063..1794650 (-) 588 WP_014704348.1 type 4a pilus biogenesis protein PilO -
  Q7C_RS08610 (Q7C_1788) - 1794650..1795213 (-) 564 WP_014704349.1 PilN domain-containing protein -
  Q7C_RS08615 (Q7C_1789) comM 1795213..1796274 (-) 1062 WP_041366681.1 pilus assembly protein PilM Machinery gene
  Q7C_RS08620 (Q7C_1790) - 1796464..1798893 (+) 2430 WP_014704351.1 penicillin-binding protein 1A -
  Q7C_RS08625 (Q7C_1791) - 1798896..1800398 (-) 1503 WP_014704352.1 M48 family metalloprotease -
  Q7C_RS08630 (Q7C_1792) rpmE 1800419..1800619 (-) 201 WP_041367055.1 50S ribosomal protein L31 -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38062.53 Da        Isoelectric Point: 4.6713

>NTDB_id=51036 Q7C_RS08615 WP_041366681.1 1795213..1796274(-) (comM) [Methylophaga frappieri]
MFGRKKSPLLGIDISSSVVKILELQQKGDRYLVESYGVEPLPVNAVIEGRIENSDEVAGAIKRAIKRANSKAKEAAVAVS
ANAAITKVVSFPASLSGRELEESVMLEAENYIPYPLEEIRLDFEVLGTSALDAEAVDVLLAASRRENVDARTAVLEKAGL
KPKLVDVEAYTIENAFILIANQLPGQGEGMTIAVADVGATVTTLYVLVDGKIVFTREQAFGGRMLTEDIERHYGMSYQEA
GRAKKDPASLPDDYQSKVLEPFKRSMTMTVTRALQFFFSASSQYQSIDHILLAGGCASIEGIAEKIEGETGTPTSVANPF
ADMVIASRIKVQALSNDAPSMMIASGLAMRSFD

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=51036 Q7C_RS08615 WP_041366681.1 1795213..1796274(-) (comM) [Methylophaga frappieri]
ATGTTTGGAAGGAAGAAGTCCCCCTTGCTGGGGATAGACATCAGCTCATCAGTAGTGAAAATACTGGAGTTGCAACAGAA
AGGAGATCGCTATTTAGTCGAATCTTATGGCGTTGAGCCGTTGCCGGTAAATGCGGTGATTGAGGGGCGGATCGAAAATA
GTGATGAAGTGGCGGGCGCGATCAAACGTGCGATAAAGCGCGCAAATTCCAAAGCCAAAGAAGCTGCTGTGGCCGTTTCG
GCGAATGCGGCAATCACGAAAGTAGTCTCTTTCCCTGCCTCACTGAGTGGTCGTGAGCTCGAAGAGAGTGTGATGCTGGA
GGCAGAAAATTACATCCCTTACCCCTTAGAGGAAATTCGTTTAGATTTTGAAGTATTGGGTACCTCGGCGCTAGATGCTG
AAGCGGTTGATGTGTTACTCGCCGCCTCGCGTCGGGAAAATGTCGATGCCCGGACTGCGGTTTTGGAAAAAGCGGGCTTA
AAACCTAAATTGGTTGATGTTGAAGCCTATACTATCGAGAATGCTTTCATACTCATTGCCAATCAATTACCGGGGCAAGG
CGAAGGAATGACGATTGCTGTGGCGGATGTGGGAGCAACAGTGACGACACTGTATGTCTTGGTTGATGGCAAAATTGTCT
TTACGCGTGAACAAGCTTTTGGCGGCAGAATGCTCACAGAAGATATCGAGCGTCACTATGGGATGTCTTATCAGGAAGCA
GGCCGAGCAAAGAAAGATCCCGCCAGTTTGCCTGATGATTATCAAAGCAAAGTGTTAGAACCCTTTAAACGCTCAATGAC
AATGACGGTTACCCGGGCGTTACAATTCTTTTTTTCGGCCTCCAGTCAGTATCAGTCCATTGATCATATTTTACTCGCCG
GGGGATGCGCTTCGATTGAAGGCATTGCCGAGAAAATTGAGGGCGAGACGGGCACGCCGACCTCGGTCGCTAACCCATTT
GCAGATATGGTTATTGCCTCCCGCATCAAAGTGCAGGCATTAAGTAATGATGCGCCATCGATGATGATTGCCAGTGGACT
CGCCATGAGGAGCTTTGACTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(11-352)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

48.159

100

0.482
  pilM Acinetobacter baumannii D1279779

48.159

100

0.482
  comM Acinetobacter baylyi ADP1

47.592

100

0.476
  pilM Legionella pneumophila strain ERS1305867

44.986

98.867

0.445

Multiple sequence alignment