Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   ST90728_RS06935 Genome accession   NZ_CP065479
Coordinates   1340492..1341985 (-) Length   497 a.a.
NCBI ID   WP_347113817.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 90728     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1335492..1346985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST90728_RS06905 (ST90728_06905) - 1335622..1335999 (+) 378 WP_011226300.1 GntR family transcriptional regulator -
  ST90728_RS06910 (ST90728_06910) - 1336004..1336702 (+) 699 WP_164178215.1 ABC transporter ATP-binding protein -
  ST90728_RS06915 (ST90728_06915) - 1336714..1337499 (+) 786 WP_347113814.1 ABC transporter permease -
  ST90728_RS06920 (ST90728_06920) amiF 1337549..1338478 (-) 930 WP_082245810.1 ATP-binding cassette domain-containing protein Regulator
  ST90728_RS06925 (ST90728_06925) amiE 1338471..1339556 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  ST90728_RS06930 (ST90728_06930) amiD 1339566..1340492 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  ST90728_RS06935 (ST90728_06935) amiC 1340492..1341985 (-) 1494 WP_347113817.1 ABC transporter permease Regulator
  ST90728_RS06940 (ST90728_06940) amiA 1342047..1344014 (-) 1968 WP_347113819.1 peptide ABC transporter substrate-binding protein Regulator
  ST90728_RS06945 (ST90728_06945) - 1344370..1345621 (+) 1252 Protein_1314 ISL3 family transposase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55737.59 Da        Isoelectric Point: 10.0618

>NTDB_id=510137 ST90728_RS06935 WP_347113817.1 1340492..1341985(-) (amiC) [Streptococcus thermophilus strain 90728]
MKKYILLRTLRSLLSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKANYENTIYERLGYIDYYDTKELQEKAS
SLDKSVTTKPTKENKAIYQKYVDSLGRGWRLHQFKQSKQFYATRDVPVLERVFGFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNGQFPFVHQNFVKMNLGTSYPTYAEQGVLDVITQGQGQTKSSVVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGNDPYTATKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMALFKNTIFDSVSTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHILKNAMVSLVSGIPASIVGVITGATLTETIFAYPGMGKMLIDSVRSSNNAMVVGLVFIFTALSIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=510137 ST90728_RS06935 WP_347113817.1 1340492..1341985(-) (amiC) [Streptococcus thermophilus strain 90728]
ATGAAAAAATACATTTTATTGAGAACACTCCGTTCTCTATTGTCAATATTTGTCGTGACGGCTTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAAGACCCAAACTACAACAAGATTGCTAAGACAGCTGATTCTAAGG
CTAACTATGAAAATACAATCTATGAACGTTTGGGTTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAAAGCTAGC
TCCCTTGATAAGTCAGTAACCACTAAGCCAACAAAAGAAAATAAGGCTATCTACCAAAAATATGTGGATAGTTTAGGACG
TGGTTGGCGTTTGCATCAGTTCAAGCAAAGTAAACAATTCTATGCGACACGTGATGTGCCAGTGCTTGAACGTGTGTTTG
GCTTCTATACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTATATC
CGTATTGAAAATGACCCAGCTATCGGTTGGTCAGTTGTTGGTTCAGGGACTAAGCATAAATATTTGCTTTACTTTAATGG
TCAGTTCCCATTTGTTCACCAAAACTTTGTGAAGATGAACCTTGGTACATCTTACCCAACTTATGCTGAGCAAGGTGTTC
TTGATGTTATTACACAAGGCCAAGGACAGACAAAAAGCTCTGTGGTTAACTTCCCTACTGGTAAGAAAATATCTTCAGTA
GATATCTACTCTCGTACTTATAAATCACCAAGTCAGGCTGACGCTAGAGATCGTTCTTACTATGGAAATGATCCATACAC
AGCTACCAAGAGTCGTTATCAATACCCATCAATGGTGACAAGTTCTGCCATTGCAGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTGGCAATTCCATTGGGATCATACATGGCACTCTTTAAAAACACAATCTTTGATAGTGTGTCAACAGGTGTCTTG
ACTTTCTTGCTTTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTGAGATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCAGGTGACTGGCGTTCATATGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCGATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTTGTTCGTTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCAAATAAACACATTTTAAAAAACGCTATGGTTTCCTTGGTTTCAGGGATCCCAGCATCTATTGTTGG
GGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTACCCTGGTATGGGTAAAATGTTGATCGACTCTGTTCGTT
CTTCTAATAATGCTATGGTCGTTGGGCTGGTATTTATTTTTACAGCTCTCTCCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATTATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus thermophilus LMG 18311

99.598

100

0.996
  amiC Streptococcus thermophilus LMD-9

99.195

100

0.992
  amiC Streptococcus salivarius strain HSISS4

96.982

100

0.97