Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   ST90728_RS06930 Genome accession   NZ_CP065479
Coordinates   1339566..1340492 (-) Length   308 a.a.
NCBI ID   WP_002946409.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 90728     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1334566..1345492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST90728_RS06900 (ST90728_06900) - 1334644..1335438 (-) 795 WP_347113812.1 HAD family hydrolase -
  ST90728_RS06905 (ST90728_06905) - 1335622..1335999 (+) 378 WP_011226300.1 GntR family transcriptional regulator -
  ST90728_RS06910 (ST90728_06910) - 1336004..1336702 (+) 699 WP_164178215.1 ABC transporter ATP-binding protein -
  ST90728_RS06915 (ST90728_06915) - 1336714..1337499 (+) 786 WP_347113814.1 ABC transporter permease -
  ST90728_RS06920 (ST90728_06920) amiF 1337549..1338478 (-) 930 WP_082245810.1 ATP-binding cassette domain-containing protein Regulator
  ST90728_RS06925 (ST90728_06925) amiE 1338471..1339556 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  ST90728_RS06930 (ST90728_06930) amiD 1339566..1340492 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  ST90728_RS06935 (ST90728_06935) amiC 1340492..1341985 (-) 1494 WP_347113817.1 ABC transporter permease Regulator
  ST90728_RS06940 (ST90728_06940) amiA 1342047..1344014 (-) 1968 WP_347113819.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34694.85 Da        Isoelectric Point: 9.7054

>NTDB_id=510136 ST90728_RS06930 WP_002946409.1 1339566..1340492(-) (amiD) [Streptococcus thermophilus strain 90728]
MASIDKSKFQFVKRDDFASETIDAPSYSYWKSVMRQFFKKKSTVVMLGILITIILMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDGNGKSLFDSVWFGARNSILIAVIATFLNVIIGLLVGAVWGISKTFDMIMMEIYNIISNIPSLLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRNLGTPTAKIVIKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=510136 ST90728_RS06930 WP_002946409.1 1339566..1340492(-) (amiD) [Streptococcus thermophilus strain 90728]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCGTCTTA
CTCATACTGGAAATCAGTGATGCGTCAATTTTTTAAAAAGAAATCAACAGTTGTAATGTTGGGAATCTTGATTACTATTA
TTTTAATGAGTTTCATCTACCCAATGTTTTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACTGACGGTAATGGTAAGTCTCTATTTGACAGTGTTTGGTTTGGGGC
TCGTAATTCTATCCTTATCGCTGTTATCGCTACCTTCCTGAATGTTATAATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCCTCTCTCCTTGTGGTTATCGTC
TTGACTTACTCATTAGGTGCTGGTTTCTGGAATATGATTTTTGCCATGACCGTAACAGGTTGGATCGGTATTGCCTATAC
AATCCGTATTCAAATCATGCGTTATCGTGATTTGGAGTATAACTTGGCTTCTCGCAATTTGGGAACACCAACGGCTAAGA
TTGTGATTAAAAATATCATGCCACAACTTGTGTCAGTTATTGTAACCATGGCTAGTCAACTTTTGCCAGGATTTATCTCT
TATGAGGCCTTCCTTTCATACTTTGGTTTGGGTCTTCCTGTTACTACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCCTATCTCTTCTGGATTCCATTGACTACCTTGATTCTTGTTTCTCTTGCCCTCTTTATTG
TTGGTCAAAACTTAGCGGATGCTAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

100

100

1
  amiD Streptococcus thermophilus LMD-9

100

100

1
  amiD Streptococcus salivarius strain HSISS4

96.429

100

0.964