Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   ST90728_RS06920 Genome accession   NZ_CP065479
Coordinates   1337549..1338478 (-) Length   309 a.a.
NCBI ID   WP_082245810.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 90728     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1332549..1343478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST90728_RS06895 (ST90728_06895) - 1333836..1334651 (-) 816 WP_011227405.1 Cof-type HAD-IIB family hydrolase -
  ST90728_RS06900 (ST90728_06900) - 1334644..1335438 (-) 795 WP_347113812.1 HAD family hydrolase -
  ST90728_RS06905 (ST90728_06905) - 1335622..1335999 (+) 378 WP_011226300.1 GntR family transcriptional regulator -
  ST90728_RS06910 (ST90728_06910) - 1336004..1336702 (+) 699 WP_164178215.1 ABC transporter ATP-binding protein -
  ST90728_RS06915 (ST90728_06915) - 1336714..1337499 (+) 786 WP_347113814.1 ABC transporter permease -
  ST90728_RS06920 (ST90728_06920) amiF 1337549..1338478 (-) 930 WP_082245810.1 ATP-binding cassette domain-containing protein Regulator
  ST90728_RS06925 (ST90728_06925) amiE 1338471..1339556 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  ST90728_RS06930 (ST90728_06930) amiD 1339566..1340492 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  ST90728_RS06935 (ST90728_06935) amiC 1340492..1341985 (-) 1494 WP_347113817.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35143.27 Da        Isoelectric Point: 6.5989

>NTDB_id=510134 ST90728_RS06920 WP_082245810.1 1337549..1338478(-) (amiF) [Streptococcus thermophilus strain 90728]
MPEKLVEVKDVEISFGEGKKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGYLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLYNFHLYKDEEERKAKIKEIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVEVRPGHFVWGNKTEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=510134 ST90728_RS06920 WP_082245810.1 1337549..1338478(-) (amiF) [Streptococcus thermophilus strain 90728]
ATGCCTGAGAAATTAGTTGAAGTAAAAGATGTGGAAATTTCCTTCGGCGAAGGAAAAAAGAAGTTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTCTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACGACTATTGGACGTG
CCATTATCGGTTTAAATGACACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAGATCAATGGATACTTATCTCACTCT
GAGAAAAACGACCTTATCCGTCGTATTCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCGACAGTCGA
TTATATCTTGTCTGAGGGCTTGTACAATTTCCATCTTTATAAAGATGAGGAAGAACGTAAGGCTAAAATCAAGGAAATCA
TCAAAGAAGTAGGACTTCTTGAGGAGCACTTAACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATCGGG
ATTGCGCGTTCTTTGGTCATGCAGCCTGATTTGGTTATCGCTGATGAACCAATCTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAGTTTTGAATTTGCTTAAGAAATTCCAAAAAGAGTTGGGGTTAACCTATCTCTTTATCGCTCACGATTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATCTATAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAGCTCTACAAC
AATCCTATCCATCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGATCCAATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACGACTATTCGGTTGATAAACCAGAAATGGTGGAAGTACGCCCAGGTCACTTCGTTT
GGGGTAATAAGACAGAAATTGAGACTTATCGTAAAGAACAAAGTAAGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(26-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

99.676

100

0.997
  amiF Streptococcus thermophilus LMD-9

99.353

100

0.994
  amiF Streptococcus salivarius strain HSISS4

98.058

100

0.981