Detailed information NTG0509972

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: ST4052_RS08485
• Genome accession: NZ_CP065476
• Coordinates: 1632521..1632949 (-)
• Length: 142 a.a.
• NCBI ID: WP_011226626.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain 4052
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1627521..1637949

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ST4052_RS08445 (ST4052_08510)	-	1627654..1628102 (-)	449	Protein_1605	CAAX protease	-
ST4052_RS08450	-	1628176..1628601 (-)	426	WP_041827107.1	CPBP family intramembrane glutamic endopeptidase	-
ST4052_RS08455 (ST4052_08520)	-	1628844..1629041 (-)	198	WP_011681682.1	helix-turn-helix transcriptional regulator	-
ST4052_RS08460 (ST4052_08525)	-	1629290..1630483 (-)	1194	WP_022096898.1	acetate kinase	-
ST4052_RS08465 (ST4052_08530)	comYH	1630539..1631495 (-)	957	WP_011226622.1	class I SAM-dependent methyltransferase	Machinery gene
ST4052_RS08470 (ST4052_08535)	comGG	1631540..1631857 (-)	318	WP_002952035.1	competence type IV pilus minor pilin ComGG	-
ST4052_RS08475 (ST4052_08540)	comYF	1631835..1632272 (-)	438	WP_014608742.1	competence type IV pilus minor pilin ComGF	Machinery gene
ST4052_RS08480 (ST4052_08545)	comGE	1632256..1632549 (-)	294	WP_347100874.1	competence type IV pilus minor pilin ComGE	-
ST4052_RS08485 (ST4052_08550)	comYD	1632521..1632949 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
ST4052_RS08490 (ST4052_08555)	comYC	1632909..1633235 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
ST4052_RS08495 (ST4052_08560)	comYB	1633232..1634332 (-)	1101	WP_148148900.1	competence type IV pilus assembly protein ComGB	Machinery gene
ST4052_RS08500 (ST4052_08565)	comGA/cglA/cilD	1634214..1635155 (-)	942	WP_011226629.1	competence type IV pilus ATPase ComGA	Machinery gene
ST4052_RS08505 (ST4052_08570)	-	1635236..1635598 (-)	363	WP_011226630.1	DUF1033 family protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15859.45 Da
• Isoelectric Point: 10.3330

>NTDB_id=509972 ST4052_RS08485 WP_011226626.1 1632521..1632949(-) (comYD) [Streptococcus thermophilus strain 4052]
MRNMVVKAAQWPIRAFTLLESLMTLAVVVFLTLSLSGSVTGIFQQVEINLFYLRFEYLYRDSQRLASAEGSNVELQLTKD
KVSNGRSSLLIPKSIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYLLNMGSGKYKKTIS

Nucleotide

• Length: 429 bp

>NTDB_id=509972 ST4052_RS08485 WP_011226626.1 1632521..1632949(-) (comYD) [Streptococcus thermophilus strain 4052]
ATGCGAAACATGGTGGTGAAAGCCGCTCAGTGGCCAATTAGAGCTTTCACCTTGTTGGAGAGCCTGATGACACTAGCAGT
GGTTGTCTTTCTCACTCTGAGTTTGTCAGGCTCAGTCACAGGTATTTTTCAGCAGGTCGAGATTAATCTTTTTTATCTGC
GTTTTGAGTACCTATATCGAGATAGTCAGCGCTTGGCATCAGCGGAAGGATCTAATGTTGAATTGCAGTTAACTAAGGAT
AAGGTTAGTAATGGAAGGTCTAGTCTGCTTATTCCTAAAAGTATTCATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
TAAAGGAGGCAACTCTAGCCTCACGAAAATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCTGCTTAACATGGGCA
GTGGTAAATATAAAAAGACGATCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	52.672	92.254	0.486
comYD	Streptococcus mutans UA159	52.672	92.254	0.486
comYD	Streptococcus gordonii str. Challis substr. CH1	41.429	98.592	0.408
comGD/cglD	Streptococcus pneumoniae Rx1	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae D39	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae R6	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis NCTC 12261	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae TIGR4	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis SK321	43.307	89.437	0.387
comGD	Lactococcus lactis subsp. cremoris KW2	40.909	92.958	0.38