Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I4484_RS18220 Genome accession   NZ_CP065435
Coordinates   3917895..3918521 (-) Length   208 a.a.
NCBI ID   WP_197448625.1    Uniprot ID   -
Organism   Halomonas sp. SS10-MC5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3912895..3923521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I4484_RS18200 (I4484_18200) fabA 3914394..3914909 (+) 516 WP_197448621.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -
  I4484_RS18205 (I4484_18205) fabB 3914924..3916141 (+) 1218 WP_197448622.1 beta-ketoacyl-ACP synthase I -
  I4484_RS18210 (I4484_18210) - 3916213..3916971 (-) 759 WP_197448623.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  I4484_RS18215 (I4484_18215) - 3916968..3917861 (-) 894 WP_197448624.1 sugar nucleotide-binding protein -
  I4484_RS18220 (I4484_18220) ssb 3917895..3918521 (-) 627 WP_197448625.1 single-stranded DNA-binding protein Machinery gene
  I4484_RS18225 (I4484_18225) - 3918593..3919978 (-) 1386 WP_197448626.1 MFS transporter -
  I4484_RS18230 (I4484_18230) uvrA 3920142..3923003 (+) 2862 WP_197448627.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 22204.26 Da        Isoelectric Point: 5.2421

>NTDB_id=509649 I4484_RS18220 WP_197448625.1 3917895..3918521(-) (ssb) [Halomonas sp. SS10-MC5]
MARGVNKVILIGNLGQDPEVRFMPSGSPVANLRVATTDTWTDKQSGQRQERTEWHSVVLFNRLAEIAQQYLKKGSRVYLE
GRLQTRKWQGQDGQDRYTTEIVCNDMQMLDSRSGDFGGQAGAGMPQQQGGGYGAPQGAPVPQQGGYGAPPQGGGGYGNAS
QQGGGGYGGQPQQRPAPGGQPQQGGQKQNNYGAPDPGSFDDFDDEIPF

Nucleotide


Download         Length: 627 bp        

>NTDB_id=509649 I4484_RS18220 WP_197448625.1 3917895..3918521(-) (ssb) [Halomonas sp. SS10-MC5]
ATGGCCCGTGGCGTCAACAAGGTCATTCTCATCGGTAACCTGGGGCAGGACCCCGAGGTCCGCTTCATGCCATCCGGCAG
CCCCGTCGCCAACCTGCGCGTGGCAACCACCGACACCTGGACCGACAAGCAGAGCGGCCAGCGTCAGGAGCGCACCGAGT
GGCACTCGGTGGTACTGTTCAACCGCCTGGCCGAGATCGCTCAGCAGTATTTGAAGAAAGGGTCTCGGGTCTACCTCGAA
GGGCGCCTGCAGACGCGCAAGTGGCAGGGACAGGACGGTCAGGATCGCTACACCACCGAGATCGTCTGCAATGACATGCA
GATGCTCGATTCGCGTAGCGGCGACTTCGGTGGCCAGGCCGGGGCGGGCATGCCGCAGCAGCAGGGTGGAGGCTACGGCG
CACCGCAAGGCGCCCCCGTGCCGCAGCAGGGCGGCTACGGCGCTCCGCCGCAAGGTGGTGGTGGCTACGGCAACGCCTCC
CAGCAGGGTGGCGGCGGCTATGGCGGCCAGCCTCAGCAGCGCCCGGCGCCGGGCGGACAGCCCCAGCAGGGCGGGCAGAA
GCAGAACAACTACGGTGCACCCGACCCGGGTAGCTTCGACGATTTCGACGACGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.296

100

0.505
  ssb Glaesserella parasuis strain SC1401

47.642

100

0.486
  ssb Neisseria gonorrhoeae MS11

42.512

99.519

0.423
  ssb Neisseria meningitidis MC58

42.718

99.038

0.423