Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | D7S_RS05120 | Genome accession | NC_017846 |
| Coordinates | 1056020..1056505 (-) | Length | 161 a.a. |
| NCBI ID | WP_014702365.1 | Uniprot ID | A0A142G044 |
| Organism | Aggregatibacter actinomycetemcomitans D7S-1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1051020..1061505
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D7S_RS12245 (D7S_01109) | - | 1052524..1052712 (-) | 189 | WP_005543949.1 | hypothetical protein | - |
| D7S_RS05110 (D7S_01110) | - | 1052879..1055050 (+) | 2172 | WP_005543943.1 | YecA family protein | - |
| D7S_RS05115 (D7S_01111) | - | 1055264..1055830 (+) | 567 | WP_005543941.1 | efflux RND transporter permease subunit | - |
| D7S_RS05120 (D7S_01112) | ssb | 1056020..1056505 (-) | 486 | WP_014702365.1 | single-stranded DNA-binding protein | Machinery gene |
| D7S_RS05125 (D7S_01113) | uvrA | 1056675..1059506 (+) | 2832 | WP_014702366.1 | excinuclease ABC subunit UvrA | - |
| D7S_RS05130 (D7S_03035) | - | 1059583..1059958 (+) | 376 | Protein_977 | transposase | - |
| D7S_RS11610 | - | 1060000..1060257 (+) | 258 | WP_145916692.1 | IS3 family transposase | - |
| D7S_RS05135 (D7S_03040) | - | 1060251..1060760 (+) | 510 | WP_236757827.1 | IS3 family transposase | - |
| D7S_RS05140 (D7S_01118) | - | 1060837..1061247 (-) | 411 | WP_005589530.1 | MerR family transcriptional regulator | - |
Sequence
Protein
Download Length: 161 a.a. Molecular weight: 17972.83 Da Isoelectric Point: 5.3111
>NTDB_id=50960 D7S_RS05120 WP_014702365.1 1056020..1056505(-) (ssb) [Aggregatibacter actinomycetemcomitans D7S-1]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANITVATSESWNDKNTGERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRADRQSGGNYAPAAVAQPSYPSQQQSAPRSAPASKPTAEAPMDNFDDDIP
F
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANITVATSESWNDKNTGERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRADRQSGGNYAPAAVAQPSYPSQQQSAPRSAPASKPTAEAPMDNFDDDIP
F
Nucleotide
Download Length: 486 bp
>NTDB_id=50960 D7S_RS05120 WP_014702365.1 1056020..1056505(-) (ssb) [Aggregatibacter actinomycetemcomitans D7S-1]
ATGGCTGGAGTAAATAAAGTGATTATCGTCGGTAATTTGGGTAACGATCCTGAAATCCGCACCATGCCGAATGGCGAAGC
CGTTGCCAACATTACCGTTGCCACCAGTGAAAGCTGGAATGACAAAAATACCGGCGAACGCCGCGAAGTCACTGAATGGC
ACCGTATCGTATTTTATCGCCGCCAGGCGGAAGTGGCGGGGGAATACCTGCGTAAAGGCTCGAAAGTCTATGTCGAAGGA
CGCTTAAGAACCCGTAAATGGCAGGATCAAAACGGTCAAGATCGCTACACCACCGAAATCCAAGGCGACGTTTTACAAAT
GTTAGACAGCCGTGCCGATCGCCAATCCGGCGGAAACTACGCACCGGCTGCAGTTGCCCAACCAAGTTATCCAAGCCAAC
AACAAAGCGCCCCACGCAGCGCGCCGGCAAGTAAACCTACCGCCGAAGCGCCGATGGATAATTTTGATGATGATATTCCG
TTCTGA
ATGGCTGGAGTAAATAAAGTGATTATCGTCGGTAATTTGGGTAACGATCCTGAAATCCGCACCATGCCGAATGGCGAAGC
CGTTGCCAACATTACCGTTGCCACCAGTGAAAGCTGGAATGACAAAAATACCGGCGAACGCCGCGAAGTCACTGAATGGC
ACCGTATCGTATTTTATCGCCGCCAGGCGGAAGTGGCGGGGGAATACCTGCGTAAAGGCTCGAAAGTCTATGTCGAAGGA
CGCTTAAGAACCCGTAAATGGCAGGATCAAAACGGTCAAGATCGCTACACCACCGAAATCCAAGGCGACGTTTTACAAAT
GTTAGACAGCCGTGCCGATCGCCAATCCGGCGGAAACTACGCACCGGCTGCAGTTGCCCAACCAAGTTATCCAAGCCAAC
AACAAAGCGCCCCACGCAGCGCGCCGGCAAGTAAACCTACCGCCGAAGCGCCGATGGATAATTTTGATGATGATATTCCG
TTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
70.556 |
100 |
0.789 |
| ssb | Vibrio cholerae strain A1552 |
57.803 |
100 |
0.621 |
| ssb | Neisseria gonorrhoeae MS11 |
47.126 |
100 |
0.509 |
| ssb | Neisseria meningitidis MC58 |
45.763 |
100 |
0.503 |