Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   I5593_RS01445 Genome accession   NZ_CP065432
Coordinates   308965..309705 (+) Length   246 a.a.
NCBI ID   WP_000076105.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ATCC 17961     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 303965..314705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5593_RS01430 (I5593_01430) ponA 304552..307107 (-) 2556 WP_000736673.1 penicillin-binding protein PBP1a -
  I5593_RS01435 (I5593_01435) pilM 307269..308327 (+) 1059 WP_031950501.1 pilus assembly protein PilM Machinery gene
  I5593_RS01440 (I5593_01440) pilN 308327..308968 (+) 642 WP_000201223.1 PilN domain-containing protein Machinery gene
  I5593_RS01445 (I5593_01445) pilO 308965..309705 (+) 741 WP_000076105.1 type 4a pilus biogenesis protein PilO Machinery gene
  I5593_RS01450 (I5593_01450) pilP 309716..310243 (+) 528 WP_000695068.1 pilus assembly protein PilP Machinery gene
  I5593_RS01455 (I5593_01455) pilQ 310306..312471 (+) 2166 WP_001017036.1 type IV pilus secretin PilQ Machinery gene
  I5593_RS01460 (I5593_01460) aroK 312483..313052 (+) 570 WP_000643712.1 shikimate kinase AroK -
  I5593_RS01465 (I5593_01465) aroB 313081..314163 (+) 1083 WP_001193995.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27847.64 Da        Isoelectric Point: 4.8357

>NTDB_id=509594 I5593_RS01445 WP_000076105.1 308965..309705(+) (pilO) [Acinetobacter baumannii strain ATCC 17961]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQVIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=509594 I5593_RS01445 WP_000076105.1 308965..309705(+) (pilO) [Acinetobacter baumannii strain ATCC 17961]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGTTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAAAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterProScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

99.593

100

0.996
  comO Acinetobacter baylyi ADP1

69.136

98.78

0.683