Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   I5593_RS01440 Genome accession   NZ_CP065432
Coordinates   308327..308968 (+) Length   213 a.a.
NCBI ID   WP_000201223.1    Uniprot ID   N9LAP0
Organism   Acinetobacter baumannii strain ATCC 17961     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 303327..313968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5593_RS01420 (I5593_01420) - 303375..303707 (+) 333 WP_000598371.1 hypothetical protein -
  I5593_RS01425 (I5593_01425) - 303710..304534 (+) 825 WP_100223340.1 putative RNA methyltransferase -
  I5593_RS01430 (I5593_01430) ponA 304552..307107 (-) 2556 WP_000736673.1 penicillin-binding protein PBP1a -
  I5593_RS01435 (I5593_01435) pilM 307269..308327 (+) 1059 WP_031950501.1 pilus assembly protein PilM Machinery gene
  I5593_RS01440 (I5593_01440) pilN 308327..308968 (+) 642 WP_000201223.1 PilN domain-containing protein Machinery gene
  I5593_RS01445 (I5593_01445) pilO 308965..309705 (+) 741 WP_000076105.1 type 4a pilus biogenesis protein PilO Machinery gene
  I5593_RS01450 (I5593_01450) pilP 309716..310243 (+) 528 WP_000695068.1 pilus assembly protein PilP Machinery gene
  I5593_RS01455 (I5593_01455) pilQ 310306..312471 (+) 2166 WP_001017036.1 type IV pilus secretin PilQ Machinery gene
  I5593_RS01460 (I5593_01460) aroK 312483..313052 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23999.36 Da        Isoelectric Point: 5.3968

>NTDB_id=509593 I5593_RS01440 WP_000201223.1 308327..308968(+) (pilN) [Acinetobacter baumannii strain ATCC 17961]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVATTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=509593 I5593_RS01440 WP_000201223.1 308327..308968(+) (pilN) [Acinetobacter baumannii strain ATCC 17961]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATCCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCACCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.061

100

0.991
  comN Acinetobacter baylyi ADP1

72.115

97.653

0.704