Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   I5V48_RS04210 Genome accession   NZ_CP065430
Coordinates   878049..878990 (+) Length   313 a.a.
NCBI ID   WP_043033371.1    Uniprot ID   A0A0Z8I270
Organism   Streptococcus suis strain YZDH1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 873049..883990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5V48_RS12190 - 874824..874949 (+) 126 WP_256769054.1 hypothetical protein -
  I5V48_RS04200 (I5V48_04200) - 874933..875772 (+) 840 WP_231640507.1 hypothetical protein -
  I5V48_RS04205 (I5V48_04205) metG 875982..877985 (+) 2004 WP_197315143.1 methionine--tRNA ligase -
  I5V48_RS04210 (I5V48_04210) coiA 878049..878990 (+) 942 WP_043033371.1 competence protein CoiA Machinery gene
  I5V48_RS04215 (I5V48_04215) pepF 879219..881021 (+) 1803 WP_043026097.1 oligoendopeptidase F Regulator
  I5V48_RS04220 (I5V48_04220) - 881023..881466 (+) 444 WP_014637769.1 hypothetical protein -
  I5V48_RS04225 (I5V48_04225) - 881477..882025 (+) 549 WP_024419199.1 DUF6630 family protein -
  I5V48_RS04230 (I5V48_04230) - 882100..882819 (+) 720 WP_044672599.1 O-methyltransferase -
  I5V48_RS04235 (I5V48_04235) prsA 882882..883883 (+) 1002 WP_044689579.1 peptidylprolyl isomerase PrsA -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 36289.88 Da        Isoelectric Point: 8.4363

>NTDB_id=509520 I5V48_RS04210 WP_043033371.1 878049..878990(+) (coiA) [Streptococcus suis strain YZDH1]
MLVALDEDGQVFNVLENPAPQGRYSCPGCGGLVRYKSGKVLRSHFAHVTLRDCTYFSENESAQHLSLKSSLYKWLQGQEE
VELEAYLPATKQVADLLVNQQLALEVQCSSLPISRLQVRTEAYQQAGIAVLWLLGKDLWLGERLTNLHKQFLSFSMNMGF
HLWELDDEKKELRLRYLIHEDLRGKVHCLTKVFPFGEGNLLEILRLPFAKQALSHLTCPLDRDLPRYIAQQLYYKSPNWL
ALQAESYSRGENLLTKTAEEWYPHIRLPRSAIGFAQIKQDLTPIYQAFDRFYDKAKDKRKQILYPPIIYRKPM

Nucleotide


Download         Length: 942 bp        

>NTDB_id=509520 I5V48_RS04210 WP_043033371.1 878049..878990(+) (coiA) [Streptococcus suis strain YZDH1]
ATGTTAGTAGCACTTGATGAAGATGGGCAAGTTTTTAATGTCTTGGAAAATCCTGCGCCGCAAGGTCGCTATTCCTGTCC
AGGTTGTGGAGGACTGGTCCGATACAAATCCGGAAAAGTTCTGCGTTCGCACTTTGCCCATGTAACCCTACGGGATTGCA
CATACTTTTCCGAGAATGAGTCAGCCCAGCATCTGTCCCTCAAGTCCAGTCTGTATAAGTGGTTACAGGGTCAGGAAGAA
GTAGAGTTAGAGGCCTATCTTCCTGCAACCAAGCAGGTGGCAGATCTCTTGGTCAATCAGCAACTTGCCTTGGAAGTCCA
ATGTTCCAGTCTACCCATTTCACGCTTGCAGGTGCGGACTGAGGCATACCAGCAAGCAGGTATAGCTGTTCTGTGGCTTC
TGGGAAAGGATCTCTGGCTTGGCGAACGATTGACCAATCTCCACAAACAATTCCTCTCTTTTAGTATGAACATGGGTTTT
CACCTCTGGGAATTGGATGACGAGAAAAAAGAATTGCGTCTTCGTTACCTTATTCACGAAGACTTACGAGGTAAGGTCCA
CTGTCTGACAAAGGTTTTTCCATTTGGCGAGGGAAATTTATTGGAAATCTTGCGTCTGCCTTTTGCCAAGCAAGCTTTAT
CGCATCTTACTTGCCCGTTAGATAGGGATTTGCCTCGCTACATTGCTCAACAGCTTTATTACAAATCCCCCAATTGGTTA
GCCCTGCAGGCAGAGTCTTATAGCCGAGGGGAGAATTTGCTGACAAAGACGGCAGAAGAATGGTATCCCCACATCCGTCT
ACCCCGCTCTGCCATTGGCTTTGCCCAAATCAAGCAAGACCTGACACCGATTTACCAAGCATTTGATCGGTTTTACGACA
AAGCAAAAGATAAGAGAAAACAAATCTTGTATCCACCTATCATTTATAGAAAACCAATGTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(21-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8I270

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

53.846

99.681

0.537
  coiA Streptococcus pneumoniae TIGR4

52.244

99.681

0.521
  coiA Streptococcus pneumoniae Rx1

52.244

99.681

0.521
  coiA Streptococcus pneumoniae D39

52.244

99.681

0.521
  coiA Streptococcus pneumoniae R6

52.244

99.681

0.521
  coiA Lactococcus lactis subsp. cremoris KW2

43.125

100

0.441