Detailed information    

insolico Bioinformatically predicted

Overview

Name   micB   Type   Regulator
Locus tag   I5V48_RS03810 Genome accession   NZ_CP065430
Coordinates   779366..780715 (+) Length   449 a.a.
NCBI ID   WP_105152095.1    Uniprot ID   A0A7T1P797
Organism   Streptococcus suis strain YZDH1     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 774366..785715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5V48_RS03785 (I5V48_03785) - 775477..776136 (-) 660 WP_014637676.1 amino acid ABC transporter permease -
  I5V48_RS03790 (I5V48_03790) - 776151..776849 (-) 699 WP_004298848.1 amino acid ABC transporter permease -
  I5V48_RS03795 (I5V48_03795) - 776864..777703 (-) 840 WP_105130430.1 transporter substrate-binding domain-containing protein -
  I5V48_RS03800 (I5V48_03800) - 777714..778475 (-) 762 WP_105130429.1 amino acid ABC transporter ATP-binding protein -
  I5V48_RS03805 (I5V48_03805) micA 778669..779373 (+) 705 WP_004298854.1 response regulator YycF Regulator
  I5V48_RS03810 (I5V48_03810) micB 779366..780715 (+) 1350 WP_105152095.1 cell wall metabolism sensor histidine kinase VicK Regulator
  I5V48_RS03815 (I5V48_03815) vicX 780722..781525 (+) 804 WP_044687053.1 MBL fold metallo-hydrolase Regulator
  I5V48_RS03820 (I5V48_03820) vga(F) 782055..783440 (+) 1386 WP_197315133.1 ABC-F type ribosomal protection protein Vga(F) -
  I5V48_RS03825 (I5V48_03825) pbp2b 783532..785604 (+) 2073 WP_197315134.1 penicillin-binding protein PBP2B -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 50991.08 Da        Isoelectric Point: 4.5495

>NTDB_id=509516 I5V48_RS03810 WP_105152095.1 779366..780715(+) (micB) [Streptococcus suis strain YZDH1]
MINQLRYLMTTAEFWFVVILIGFLIALTVLLIENYRDNKQIKQLNQKVNALIEGNYADVLDMRGSPEITDMANSLNDLSE
VIRLTHDNLEQEKTRLTSILSYMSDGVIATDRIGRIIMINDMAQKQLGLSNPKQEQYHLLEVLDLSDRYTLRDLLAQTPE
IVIAHTNENEEFLTLRANFATIRSESGLISGLVVVLHDMTEQAKEERERRLFVSNVSHELRTPLTSVKSYLEALDEGALT
ESVAPSFVKVSLDETNRMMRMITDLLSLSRIDNQVGQIDVELINFTAFVTFILNRFDQMKNADSDKVYTIVRDYQISPIW
VEIDTDKMTQVLDNILNNAIKYSPDGGTITFSMKTTDSQLIVSVSDEGLGIPKADLPRIFDRFYRVDKARSRAQGGTGLG
LAIAKEIVKQHKGFIWAKSEYGHGSTFTIVLPYSKDIALDEWDDSDEEE

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=509516 I5V48_RS03810 WP_105152095.1 779366..780715(+) (micB) [Streptococcus suis strain YZDH1]
ATGATTAATCAATTACGTTATTTAATGACCACGGCAGAATTTTGGTTTGTTGTCATTTTGATTGGCTTTCTAATTGCTCT
GACGGTCCTTTTGATTGAAAACTATCGGGATAATAAGCAAATTAAACAACTCAATCAAAAAGTCAATGCCTTAATTGAGG
GGAATTATGCAGATGTGTTAGACATGAGGGGAAGTCCTGAAATCACAGACATGGCTAATTCCCTCAATGATTTGTCCGAG
GTCATCCGCTTAACTCATGATAATTTAGAACAAGAAAAGACGCGTCTGACGTCCATCCTGTCCTATATGAGTGACGGTGT
TATTGCTACAGACCGTATCGGACGGATTATCATGATTAACGATATGGCCCAGAAACAGTTGGGATTATCTAACCCAAAGC
AGGAGCAGTATCACCTGCTCGAGGTTTTAGATTTATCAGACCGTTATACATTGAGAGATTTGTTGGCTCAGACACCTGAG
ATTGTGATTGCTCACACCAATGAAAACGAAGAATTTTTGACTTTACGTGCTAATTTTGCCACGATTCGTAGTGAGAGTGG
TCTGATTTCTGGCCTGGTTGTCGTCTTGCATGATATGACCGAGCAGGCCAAGGAAGAACGGGAACGTAGGCTCTTTGTGT
CAAATGTGAGTCATGAATTGCGTACGCCATTGACTTCCGTTAAATCCTATCTAGAGGCTCTGGATGAGGGAGCGCTGACG
GAGTCTGTTGCACCGAGTTTTGTCAAGGTATCCTTAGATGAGACCAACCGCATGATGCGGATGATTACAGACCTCCTAAG
CTTATCGCGTATTGATAATCAAGTTGGTCAGATAGATGTCGAACTGATAAACTTTACTGCTTTTGTGACCTTTATTCTTA
ACCGTTTTGACCAAATGAAAAATGCTGATTCTGATAAGGTCTATACGATTGTTCGTGACTATCAAATCAGTCCTATTTGG
GTTGAGATTGATACAGATAAGATGACTCAGGTTTTGGATAATATCTTAAATAATGCCATTAAATATTCGCCAGATGGCGG
GACAATTACCTTCAGCATGAAGACCACAGATAGCCAGTTGATTGTATCCGTCTCAGACGAAGGTCTGGGGATTCCGAAAG
CAGATTTACCTAGAATTTTTGACCGATTTTATCGCGTAGACAAGGCACGATCTCGTGCCCAAGGCGGTACAGGTCTTGGT
TTAGCTATTGCAAAAGAAATCGTAAAACAGCATAAGGGTTTTATCTGGGCTAAAAGCGAATATGGTCATGGCTCAACGTT
TACAATTGTCTTGCCGTACAGCAAGGACATCGCACTGGATGAGTGGGATGATTCAGATGAGGAAGAATAG

Domains

Predicted by InterproScan.

PAS fold (PAS)

(96-199)

His Kinase A (phospho-acceptor) domain (HisKA)

(209-273)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(324-434)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T1P797

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micB Streptococcus pneumoniae Cp1015

69.954

97.105

0.679
  vicK Streptococcus mutans UA159

70.72

89.755

0.635