Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   I5V48_RS03815 Genome accession   NZ_CP065430
Coordinates   780722..781525 (+) Length   267 a.a.
NCBI ID   WP_044687053.1    Uniprot ID   A0A0Z8SYS7
Organism   Streptococcus suis strain YZDH1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 775722..786525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5V48_RS03790 (I5V48_03790) - 776151..776849 (-) 699 WP_004298848.1 amino acid ABC transporter permease -
  I5V48_RS03795 (I5V48_03795) - 776864..777703 (-) 840 WP_105130430.1 transporter substrate-binding domain-containing protein -
  I5V48_RS03800 (I5V48_03800) - 777714..778475 (-) 762 WP_105130429.1 amino acid ABC transporter ATP-binding protein -
  I5V48_RS03805 (I5V48_03805) micA 778669..779373 (+) 705 WP_004298854.1 response regulator YycF Regulator
  I5V48_RS03810 (I5V48_03810) micB 779366..780715 (+) 1350 WP_105152095.1 cell wall metabolism sensor histidine kinase VicK Regulator
  I5V48_RS03815 (I5V48_03815) vicX 780722..781525 (+) 804 WP_044687053.1 MBL fold metallo-hydrolase Regulator
  I5V48_RS03820 (I5V48_03820) vga(F) 782055..783440 (+) 1386 WP_197315133.1 ABC-F type ribosomal protection protein Vga(F) -
  I5V48_RS03825 (I5V48_03825) pbp2b 783532..785604 (+) 2073 WP_197315134.1 penicillin-binding protein PBP2B -
  I5V48_RS03830 (I5V48_03830) recR 785613..786209 (+) 597 WP_002935848.1 recombination mediator RecR -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29658.77 Da        Isoelectric Point: 5.9833

>NTDB_id=509517 I5V48_RS03815 WP_044687053.1 780722..781525(+) (vicX) [Streptococcus suis strain YZDH1]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEINRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=509517 I5V48_RS03815 WP_044687053.1 780722..781525(+) (vicX) [Streptococcus suis strain YZDH1]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACCTAGAAACAGATAAAAA
GAAAATTTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTGGCGGAAATTAATCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCATATCCATGGTATCGGTGTTCTGGCACGTAAATATGGTATGGAT
ATTTATGCCAATGAGTTGACCTGGCAGGCTATGGAAAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGCGACCTAGATATTGAGTCCTTTGGTGTCAGTCATGATGCGGCCTGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTAACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCCAACCATGATATTGAAATTTTGCGCTCGGGTTCTTACTCTTGGAACCTCAA
ACAACGGATTTTGTCAGATAAGGGCCATCTTTGTAATGAAGACGGTGCTGACGCCATGATTCGCTCGTTGGGAAATCGGA
CCAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAGTTG
GCGCAGGCTGATTTAGGAGTTGGAGTGGATTTCCAAGTCTATGACACATCGCCAGATACAGCGACGCCATTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8SYS7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.779

100

0.768