Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IT972_RS08750 Genome accession   NZ_CP065429
Coordinates   1815288..1815812 (-) Length   174 a.a.
NCBI ID   WP_005853386.1    Uniprot ID   A0A345R0M7
Organism   Sulfitobacter sp. B30-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1810288..1820812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IT972_RS08725 (IT972_08725) - 1810729..1811703 (-) 975 WP_197145687.1 site-specific tyrosine recombinase XerD -
  IT972_RS08730 (IT972_08730) - 1811703..1813271 (-) 1569 WP_197145689.1 hypothetical protein -
  IT972_RS08735 (IT972_08735) - 1813268..1813417 (-) 150 WP_005853380.1 hypothetical protein -
  IT972_RS08740 (IT972_08740) - 1813498..1814088 (+) 591 WP_074634969.1 shikimate kinase -
  IT972_RS08745 (IT972_08745) aroB 1814088..1815203 (+) 1116 WP_074634968.1 3-dehydroquinate synthase -
  IT972_RS08750 (IT972_08750) ssb 1815288..1815812 (-) 525 WP_005853386.1 single-stranded DNA-binding protein Machinery gene
  IT972_RS08755 (IT972_08755) - 1816032..1816616 (+) 585 WP_064215715.1 lytic transglycosylase domain-containing protein -
  IT972_RS08760 (IT972_08760) - 1816790..1817317 (+) 528 WP_074634967.1 hypothetical protein -
  IT972_RS08765 (IT972_08765) - 1817392..1819479 (-) 2088 WP_197145691.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18347.92 Da        Isoelectric Point: 5.0178

>NTDB_id=509488 IT972_RS08750 WP_005853386.1 1815288..1815812(-) (ssb) [Sulfitobacter sp. B30-2]
MAGSVNKVILIGNLGRDPEVRSFQNGGKVCNLRIATSETWKDRNTGERREKTEWHSVAIFQEGLVRIAEQYLKKGSKVYI
EGQLQTRKWQDQSGQDKYSTEVVLQGFGGTLTMLDGRDGGGSGGGGNYGGGGGGYDSGPSDQGGYGGGYDSGPSGGGNDG
GRGSSRDLDDEIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=509488 IT972_RS08750 WP_005853386.1 1815288..1815812(-) (ssb) [Sulfitobacter sp. B30-2]
ATGGCCGGCTCAGTGAATAAAGTGATCCTAATCGGGAATCTGGGGCGCGATCCCGAAGTGCGTTCGTTCCAGAACGGCGG
CAAAGTGTGCAACCTGCGCATCGCGACATCCGAGACATGGAAAGACCGCAACACCGGCGAGCGCCGCGAAAAGACCGAAT
GGCATTCGGTGGCGATCTTTCAGGAAGGGCTTGTGCGCATTGCAGAGCAATACCTGAAGAAGGGTTCCAAAGTATATATC
GAAGGCCAGCTGCAAACGCGCAAATGGCAAGATCAGTCCGGTCAAGATAAATACAGCACAGAAGTTGTCCTGCAGGGCTT
TGGCGGCACGCTGACCATGCTCGATGGCCGCGACGGTGGTGGTTCCGGTGGTGGTGGCAACTACGGCGGCGGCGGTGGCG
GCTACGACAGCGGCCCATCGGATCAAGGCGGCTACGGCGGCGGCTATGACAGTGGCCCCTCGGGCGGCGGCAACGACGGT
GGTCGCGGTTCCTCGCGCGATCTGGATGATGAAATTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A345R0M7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.023

99.425

0.517
  ssb Glaesserella parasuis strain SC1401

45.789

100

0.5
  ssb Neisseria meningitidis MC58

41.341

100

0.425
  ssb Neisseria gonorrhoeae MS11

41.341

100

0.425