Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I5776_RS21245 Genome accession   NZ_CP065425
Coordinates   4294371..4294883 (-) Length   170 a.a.
NCBI ID   WP_202778446.1    Uniprot ID   -
Organism   Heyndrickxia vini strain JCM 19841     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4289371..4299883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5776_RS21230 (I5776_21220) - 4290847..4291791 (-) 945 WP_202778444.1 YybS family protein -
  I5776_RS21235 (I5776_21225) - 4291902..4293917 (-) 2016 WP_202778445.1 methyl-accepting chemotaxis protein -
  I5776_RS21240 (I5776_21230) rpsR 4294103..4294339 (-) 237 WP_058005131.1 30S ribosomal protein S18 -
  I5776_RS21245 (I5776_21235) ssbA 4294371..4294883 (-) 513 WP_202778446.1 single-stranded DNA-binding protein Machinery gene
  I5776_RS21250 (I5776_21240) rpsF 4294948..4295235 (-) 288 WP_202778447.1 30S ribosomal protein S6 -
  I5776_RS21255 (I5776_21245) ychF 4295550..4296650 (-) 1101 WP_202778448.1 redox-regulated ATPase YchF -
  I5776_RS21260 (I5776_21250) - 4296823..4297020 (-) 198 WP_202778449.1 DUF951 domain-containing protein -
  I5776_RS21265 (I5776_21255) - 4297020..4297901 (-) 882 WP_202778450.1 mechanosensitive ion channel family protein -
  I5776_RS21270 (I5776_21260) yyaC 4298073..4298693 (+) 621 WP_202778451.1 spore protease YyaC -
  I5776_RS21275 (I5776_21265) - 4298791..4299507 (-) 717 WP_202780895.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19059.84 Da        Isoelectric Point: 4.7726

>NTDB_id=509476 I5776_RS21245 WP_202778446.1 4294371..4294883(-) (ssbA) [Heyndrickxia vini strain JCM 19841]
MMNRVVLVGRLTKDPDLRYTPSGVAVATFTLAVNRTFTNQQGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRLQTR
NYEGQDGKRVYVTEVVAESVQFLEPRNANANPNQQGGNNDFYGGGQRNQNTPFNQNQNQNQRNQGYTRVDEDPFSNDGQP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=509476 I5776_RS21245 WP_202778446.1 4294371..4294883(-) (ssbA) [Heyndrickxia vini strain JCM 19841]
ATGATGAACCGAGTCGTATTAGTAGGTCGATTAACGAAAGATCCAGACTTACGATATACTCCAAGTGGGGTTGCTGTTGC
CACTTTTACTCTTGCTGTGAATCGTACGTTTACGAATCAACAAGGTGAAAGGGAAGCGGACTTTATTAATTGTGTAGTAT
GGCGTAAACCGGCTGAAAATGTTGCGAACTTCTTGAAAAAGGGAAGTCTAGCGGGTGTTGACGGTCGTTTGCAAACTCGT
AATTATGAAGGACAAGATGGGAAACGCGTATATGTTACTGAAGTAGTGGCAGAAAGTGTTCAATTCTTAGAGCCAAGAAA
TGCTAATGCTAACCCTAATCAGCAGGGTGGTAACAATGATTTTTATGGCGGTGGTCAGAGAAATCAAAACACACCATTCA
ACCAAAACCAAAATCAGAATCAACGAAACCAAGGATATACACGAGTAGATGAAGATCCATTTTCAAATGATGGTCAACCG
ATTGACATCTCAGACGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

69.942

100

0.712
  ssb Latilactobacillus sakei subsp. sakei 23K

56.044

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

62.353

0.394
  ssb Vibrio cholerae strain A1552

35.754

100

0.376