Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   SAIN_RS08800 Genome accession   NC_022244
Coordinates   1781499..1781729 (-) Length   76 a.a.
NCBI ID   WP_003026583.1    Uniprot ID   -
Organism   Streptococcus anginosus C1051     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1776499..1786729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAIN_RS08785 (SAIN_1710) - 1776592..1778748 (-) 2157 WP_412093814.1 SSURE domain-containing protein -
  SAIN_RS10150 - 1778721..1779137 (-) 417 WP_412093810.1 YSIRK-type signal peptide-containing protein -
  SAIN_RS08790 (SAIN_1711) - 1779290..1779745 (+) 456 WP_041784064.1 histidine phosphatase family protein -
  SAIN_RS08795 (SAIN_1712) - 1779916..1781118 (+) 1203 WP_021002179.1 IS110 family transposase -
  SAIN_RS08800 (SAIN_1713) comW 1781499..1781729 (-) 231 WP_003026583.1 sigma(X)-activator ComW Regulator
  SAIN_RS08805 (SAIN_1714) - 1781946..1782236 (-) 291 Protein_1707 SDR family NAD(P)-dependent oxidoreductase -
  SAIN_RS08810 (SAIN_1715) - 1782263..1783315 (-) 1053 WP_021002180.1 sugar transferase -
  SAIN_RS08815 (SAIN_1716) - 1783371..1784318 (-) 948 WP_021002181.1 stealth family protein -
  SAIN_RS08820 (SAIN_1717) glf 1784315..1785415 (-) 1101 WP_021002182.1 UDP-galactopyranose mutase -
  SAIN_RS08825 (SAIN_1718) - 1785429..1786426 (-) 998 Protein_1711 acyltransferase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 9461.81 Da        Isoelectric Point: 6.2081

>NTDB_id=50945 SAIN_RS08800 WP_003026583.1 1781499..1781729(-) (comW) [Streptococcus anginosus C1051]
MMEIQEIYNQFRDYYGELEAEYAHCQKASMEWESLRLHYLIYYLIRYGIGEMKFFNAYHYRAAYRWYLQSLMLSSA

Nucleotide


Download         Length: 231 bp        

>NTDB_id=50945 SAIN_RS08800 WP_003026583.1 1781499..1781729(-) (comW) [Streptococcus anginosus C1051]
ATGATGGAAATTCAAGAAATTTATAATCAATTCAGAGATTACTATGGGGAGCTTGAGGCTGAGTATGCCCATTGTCAAAA
GGCTAGCATGGAGTGGGAAAGCCTGCGTCTGCACTATCTGATATACTACCTGATACGCTACGGTATCGGGGAGATGAAGT
TTTTTAATGCCTATCATTATCGGGCAGCTTATCGCTGGTATTTGCAGTCCTTGATGCTGAGCTCGGCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus pneumoniae Rx1

43.836

96.053

0.421
  comW Streptococcus pneumoniae D39

43.836

96.053

0.421
  comW Streptococcus pneumoniae R6

43.836

96.053

0.421
  comW Streptococcus pneumoniae TIGR4

43.836

96.053

0.421
  comW Streptococcus mitis NCTC 12261

41.096

96.053

0.395
  comW Streptococcus mitis SK321

41.096

96.053

0.395

Multiple sequence alignment