Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   W5S_RS18425 Genome accession   NC_017845
Coordinates   4092716..4093258 (+) Length   180 a.a.
NCBI ID   WP_014701314.1    Uniprot ID   A0AAE9SYY7
Organism   Pectobacterium parmentieri     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4087716..4098258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  W5S_RS18415 (W5S_3800) - 4089195..4089614 (-) 420 WP_014701312.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  W5S_RS18420 (W5S_3801) uvrA 4089632..4092466 (-) 2835 WP_014701313.1 excinuclease ABC subunit UvrA -
  W5S_RS18425 (W5S_3802) ssb 4092716..4093258 (+) 543 WP_014701314.1 single-stranded DNA-binding protein SSB1 Machinery gene
  W5S_RS18430 (W5S_3803) - 4093501..4095342 (+) 1842 WP_014701315.1 amidohydrolase -
  W5S_RS18435 (W5S_3804) - 4095575..4096030 (+) 456 WP_014701316.1 GNAT family N-acetyltransferase -
  W5S_RS18440 (W5S_3805) - 4096098..4096688 (+) 591 WP_014701317.1 hypothetical protein -
  W5S_RS18445 (W5S_3806) - 4096800..4097231 (-) 432 WP_014701318.1 carboxymuconolactone decarboxylase family protein -
  W5S_RS18450 (W5S_3807) - 4097372..4097803 (-) 432 WP_014701319.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19099.08 Da        Isoelectric Point: 5.2456

>NTDB_id=50944 W5S_RS18425 WP_014701314.1 4092716..4093258(+) (ssb) [Pectobacterium parmentieri]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGNAGGGQQQGGWGQPQQPQGGNQFSGGAQAQQRPAQ
NSAPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=50944 W5S_RS18425 WP_014701314.1 4092716..4093258(+) (ssb) [Pectobacterium parmentieri]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCGGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCTACGTCGGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACCG
AATGGCACCGTGTGGTTCTGTTCGGCAAACTGGCAGAAGTTGCAGGCGAATACCTGCGCAAAGGCTCTCAGGTTTATATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAGCGCTACACCACCGAAGTCGTTGTTAACGTCGG
CGGCACCATGCAGATGCTGGGTGGACGCCAGGGCGGCGGCGCACCAGCAGGCGGTAATGCAGGTGGCGGTCAGCAGCAAG
GCGGTTGGGGTCAACCTCAGCAGCCGCAGGGTGGCAACCAATTCAGCGGCGGTGCGCAAGCTCAGCAGCGTCCGGCACAG
AACAGCGCGCCCGCACAAAGTAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.193

100

0.75
  ssb Glaesserella parasuis strain SC1401

57.297

100

0.589
  ssb Neisseria meningitidis MC58

46.369

99.444

0.461
  ssb Neisseria gonorrhoeae MS11

46.369

99.444

0.461

Multiple sequence alignment