Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I3B46_RS02455 Genome accession   NZ_CP065420
Coordinates   572719..573234 (+) Length   171 a.a.
NCBI ID   WP_004924506.1    Uniprot ID   A0A140NIZ6
Organism   Providencia sp. 2.29     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 567719..578234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3B46_RS02430 (I3B46_02430) - 567957..568244 (-) 288 WP_014656874.1 type II toxin-antitoxin system RelE/ParE family toxin -
  I3B46_RS02435 (I3B46_02435) - 568241..568504 (-) 264 WP_004924521.1 type II toxin-antitoxin system ParD family antitoxin -
  I3B46_RS02440 (I3B46_02440) - 568583..568921 (-) 339 WP_104873021.1 hypothetical protein -
  I3B46_RS02450 (I3B46_02450) uvrA 569495..572329 (-) 2835 WP_014656873.1 excinuclease ABC subunit UvrA -
  I3B46_RS02455 (I3B46_02455) ssb 572719..573234 (+) 516 WP_004924506.1 single-stranded DNA-binding protein Machinery gene
  I3B46_RS02460 (I3B46_02460) - 573884..575983 (+) 2100 WP_004924500.1 RecQ family ATP-dependent DNA helicase -
  I3B46_RS02465 (I3B46_02465) - 575980..577329 (+) 1350 WP_104873020.1 DNA-processing protein DprA -
  I3B46_RS02470 (I3B46_02470) aarP 577820..578227 (-) 408 WP_004924490.1 HTH-type transcriptional activator AarP -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18371.35 Da        Isoelectric Point: 4.9567

>NTDB_id=509346 I3B46_RS02455 WP_004924506.1 572719..573234(+) (ssb) [Providencia sp. 2.29]
MASRGVNKVILIGNLGQDPEIRYMPNGGAVANLTLATSESWRDKQTGEMREKTEWHRVVIFGKLAEVAGEYLKKGSQVYI
EGSLQTRKWQDQSGQDRYTTEVVVNIGGSMQMLGGRGGESSGQSQGGQSGWGQPQQPAAQQFSGGGAPARSPAPAPQSSE
PPMDFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=509346 I3B46_RS02455 WP_004924506.1 572719..573234(+) (ssb) [Providencia sp. 2.29]
ATGGCCAGCAGAGGCGTAAATAAAGTAATTCTTATCGGTAACTTAGGGCAAGATCCTGAAATCCGTTACATGCCTAACGG
TGGTGCTGTTGCAAACCTGACTCTGGCAACTTCTGAAAGCTGGCGCGATAAGCAAACTGGTGAAATGCGTGAGAAAACAG
AATGGCATCGTGTCGTGATTTTCGGCAAATTAGCTGAAGTTGCTGGTGAATATCTGAAAAAAGGTTCTCAAGTCTATATT
GAAGGTTCTTTGCAGACTCGCAAATGGCAAGACCAAAGTGGTCAAGACCGTTACACCACTGAAGTTGTGGTTAACATCGG
TGGCTCAATGCAAATGTTAGGCGGTCGTGGTGGCGAATCATCAGGCCAAAGCCAAGGTGGTCAAAGCGGTTGGGGTCAGC
CTCAGCAACCAGCGGCTCAGCAATTCAGTGGTGGCGGCGCCCCAGCGCGTTCACCAGCACCTGCGCCACAAAGCAGCGAA
CCACCAATGGACTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A140NIZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

70.33

100

0.749
  ssb Glaesserella parasuis strain SC1401

57.065

100

0.614
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.509
  ssb Neisseria meningitidis MC58

47.514

100

0.503