Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I5960_RS04010 Genome accession   NZ_CP065411
Coordinates   804400..804948 (+) Length   182 a.a.
NCBI ID   WP_149288273.1    Uniprot ID   -
Organism   Kosakonia radicincitans strain IAC-BECa95     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 799400..809948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5960_RS03990 - 799720..800040 (+) 321 WP_227136378.1 hypothetical protein -
  I5960_RS03995 - 800450..801169 (+) 720 WP_107146984.1 PFL_4669 family integrating conjugative element protein -
  I5960_RS04000 - 801187..803199 (+) 2013 WP_222556493.1 DNA topoisomerase III -
  I5960_RS04005 - 803833..804324 (+) 492 WP_007372582.1 STY4534 family ICE replication protein -
  I5960_RS04010 ssb 804400..804948 (+) 549 WP_149288273.1 single-stranded DNA-binding protein Machinery gene
  I5960_RS04015 - 805049..805480 (+) 432 WP_222556492.1 DUF29 domain-containing protein -
  I5960_RS04020 - 805709..806994 (+) 1286 Protein_791 TcpQ domain-containing protein -
  I5960_RS04025 pilM 806996..807438 (+) 443 Protein_792 type IV pilus biogenesis protein PilM -
  I5960_RS26970 - 807458..809130 (+) 1673 Protein_793 PilN family type IVB pilus formation outer membrane protein -
  I5960_RS04040 - 809133..809360 (+) 228 WP_227136380.1 hypothetical protein -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20134.31 Da        Isoelectric Point: 7.2770

>NTDB_id=509254 I5960_RS04010 WP_149288273.1 804400..804948(+) (ssb) [Kosakonia radicincitans strain IAC-BECa95]
MSARGVNKVILVGHLGQDPEVRYMPDSTAVTTLSVATSETWRDKQTGENRENTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDTNGIERWTTEVRVGVNGTMQMLGGGRNNSTNTSGNNAQSGQQGGWGQPQQPQQTPSAPRNPQNEPPMDF
DDDIPFLGHGYGICRKAIYAIS

Nucleotide


Download         Length: 549 bp        

>NTDB_id=509254 I5960_RS04010 WP_149288273.1 804400..804948(+) (ssb) [Kosakonia radicincitans strain IAC-BECa95]
ATGTCCGCACGCGGCGTCAACAAAGTCATCCTGGTCGGTCATCTCGGTCAGGACCCTGAAGTTCGTTACATGCCTGACAG
TACGGCCGTGACCACGCTTTCTGTGGCCACGTCGGAAACCTGGCGTGATAAACAGACCGGTGAAAACCGTGAAAATACCG
AATGGCATCGTGTCGTGCTGTTTGGCAAGCTGGCCGAAGTGGCCGGTGAATACCTGAGAAAGGGTTCACAGGTGTATATC
GAAGGTCAGTTGCGCACCCGCAAGTGGACCGATACCAATGGTATCGAACGCTGGACGACAGAAGTCCGTGTGGGCGTTAA
CGGAACGATGCAGATGCTGGGCGGTGGCCGTAATAACAGCACCAACACCAGTGGAAATAATGCGCAGTCAGGTCAGCAGG
GCGGCTGGGGCCAGCCTCAGCAACCGCAGCAGACACCGTCAGCGCCACGAAATCCGCAGAATGAGCCGCCGATGGATTTT
GACGATGACATACCGTTCCTCGGGCACGGTTATGGCATCTGCCGGAAAGCTATTTACGCCATTTCGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

64.407

97.253

0.626
  ssb Glaesserella parasuis strain SC1401

53.514

100

0.544
  ssb Neisseria gonorrhoeae MS11

45.455

96.703

0.44
  ssb Neisseria meningitidis MC58

45.455

96.703

0.44