NTDB

Overview

Name	ysxA/radC	Type	Machinery gene
Locus tag	KU506_RS05990	Genome accession	NZ_CP077868
Coordinates	1223444..1224130 (+)	Length	228 a.a.
NCBI ID	WP_000692876.1	Uniprot ID	-
Organism	Staphylococcus aureus strain 366
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1218444..1229130

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KU506_RS05975 (KU506_05950)	-	1218558..1221188 (+)	2631	WP_000425344.1	valine--tRNA ligase	-
KU506_RS05980 (KU506_05955)	-	1221201..1222472 (+)	1272	WP_001108341.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-
KU506_RS05985 (KU506_05960)	-	1222740..1223447 (+)	708	WP_000261111.1	prepilin peptidase	-
KU506_RS05990 (KU506_05965)	ysxA/radC	1223444..1224130 (+)	687	WP_000692876.1	RadC family protein	Machinery gene
KU506_RS05995 (KU506_05970)	-	1224198..1224482 (+)	285	WP_000171863.1	hypothetical protein	-
KU506_RS06000 (KU506_05975)	-	1224599..1224796 (-)	198	WP_000025835.1	hypothetical protein	-
KU506_RS06005 (KU506_05980)	-	1224956..1225429 (+)	474	WP_001236738.1	DUF4930 family protein	-
KU506_RS06010 (KU506_05985)	-	1225503..1225622 (+)	120	WP_000840603.1	hypothetical protein	-
KU506_RS06015 (KU506_05990)	mreC	1225821..1226663 (+)	843	WP_000911041.1	rod shape-determining protein MreC	-
KU506_RS06020 (KU506_05995)	mreD	1226663..1227193 (+)	531	WP_001259925.1	rod shape-determining protein MreD	-
KU506_RS06025 (KU506_06000)	rplU	1227429..1227737 (+)	309	WP_000457386.1	50S ribosomal protein L21	-
KU506_RS06030 (KU506_06005)	-	1227743..1228063 (+)	321	WP_000633690.1	ribosomal-processing cysteine protease Prp	-
KU506_RS06035 (KU506_06010)	rpmA	1228075..1228359 (+)	285	WP_000916187.1	50S ribosomal protein L27	-

Sequence

Protein

Download Length: 228 a.a. Molecular weight: 25297.21 Da Isoelectric Point: 6.7572

                                >NTDB_id=509224 KU506_RS05990 WP_000692876.1 1223444..1224130(+) (ysxA/radC) [Staphylococcus aureus strain 366]

MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI

TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKESCVFKGTLNSSIVHPREIFSI

AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

Download Length: 687 bp

                                >NTDB_id=509224 KU506_RS05990 WP_000692876.1 1223444..1224130(+) (ysxA/radC) [Staphylococcus aureus strain 366]

TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC

AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGTATAGACATTAGTAATGAACTGCTTAAATCTG

CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT

ACATTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG

TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA

ATGTAGTGATTAAAGAAAGCTGTGTTTTTAAAGGTACATTAAATAGTTCAATTGTACATCCACGCGAAATTTTTAGTATT

GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT

CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA

GATTTACGAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-222)

UPF0758 N-terminal (UPF0758_N)

(3-80)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377

Detailed information NTG0509224