Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I3K84_RS13775 Genome accession   NZ_CP065406
Coordinates   2883601..2884146 (-) Length   181 a.a.
NCBI ID   WP_015914621.1    Uniprot ID   A0A7T1DSI3
Organism   Diaphorobacter sp. JS3051     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2878601..2889146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3K84_RS13760 (I3K84_13760) - 2879330..2880304 (-) 975 WP_088888058.1 LysR substrate-binding domain-containing protein -
  I3K84_RS13765 (I3K84_13765) mnmA 2880454..2881593 (+) 1140 WP_172208987.1 tRNA 2-thiouridine(34) synthase MnmA -
  I3K84_RS13770 (I3K84_13770) - 2881832..2883493 (+) 1662 WP_011807148.1 L-lactate permease -
  I3K84_RS13775 (I3K84_13775) ssb 2883601..2884146 (-) 546 WP_015914621.1 single-stranded DNA-binding protein Machinery gene
  I3K84_RS13780 (I3K84_13780) - 2884281..2885462 (-) 1182 WP_011807146.1 MFS transporter -
  I3K84_RS13785 (I3K84_13785) uvrA 2885753..2888842 (+) 3090 WP_196994775.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19413.40 Da        Isoelectric Point: 5.9554

>NTDB_id=509216 I3K84_RS13775 WP_015914621.1 2883601..2884146(-) (ssb) [Diaphorobacter sp. JS3051]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVRIATTDRWRDKNTGENKEATEWHSVVFNGRLAEIVGQYLRKGSQIYVEG
SLRTRKWTDQSGQERYTTEIRADTMQMLGSRQGMGGGQGGGYDDSGYGDNGGGGGGGYEAPRRAAPAPRPAPPAARPAPA
PVAQPPRAASGFDDMDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=509216 I3K84_RS13775 WP_015914621.1 2883601..2884146(-) (ssb) [Diaphorobacter sp. JS3051]
ATGGCATCCGTGAACAAAGTCATCATCGTCGGCAACCTGGGGCGCGACCCCGAGATGCGCACCTTCCCCAGCGGCGACCA
GGTCGCCAACGTGCGCATCGCCACGACGGACCGCTGGCGCGACAAGAACACCGGCGAGAACAAGGAAGCCACCGAATGGC
ACAGCGTGGTCTTCAACGGCCGCCTGGCCGAGATCGTGGGCCAGTACCTGCGCAAGGGCTCCCAGATCTACGTGGAAGGC
AGCCTGCGCACGCGCAAATGGACCGACCAGAGCGGCCAGGAGCGCTACACCACCGAAATCCGCGCCGACACCATGCAGAT
GCTGGGCAGCCGCCAGGGCATGGGCGGCGGCCAGGGCGGCGGCTATGACGACAGCGGCTACGGCGACAACGGGGGCGGTG
GTGGTGGCGGCTACGAGGCCCCGCGCCGCGCCGCACCCGCGCCGCGCCCCGCCCCCCCCGCGGCCCGCCCCGCCCCCGCG
CCCGTGGCACAGCCGCCGCGCGCCGCATCGGGCTTTGACGACATGGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T1DSI3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.813

100

0.552
  ssb Vibrio cholerae strain A1552

50.267

100

0.519
  ssb Neisseria gonorrhoeae MS11

44.751

100

0.448
  ssb Neisseria meningitidis MC58

42.308

100

0.425