Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I5770_RS00990 Genome accession   NZ_CP065399
Coordinates   202039..202548 (+) Length   169 a.a.
NCBI ID   WP_009364346.1    Uniprot ID   -
Organism   Brucella sp. BO2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 197039..207548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5770_RS00980 (I5770_00980) - 199942..201126 (+) 1185 WP_009364405.1 IS110 family transposase -
  I5770_RS00985 (I5770_00985) - 201270..201470 (-) 201 WP_083808096.1 hypothetical protein -
  I5770_RS00990 (I5770_00990) ssb 202039..202548 (+) 510 WP_009364346.1 single-stranded DNA-binding protein Machinery gene
  I5770_RS00995 (I5770_00995) phnF 202781..203578 (-) 798 WP_009364345.1 phosphonate metabolism transcriptional regulator PhnF -
  I5770_RS01000 (I5770_01000) phnN 203765..204343 (+) 579 WP_025199512.1 phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN -
  I5770_RS01005 (I5770_01005) - 204434..205063 (-) 630 WP_006070834.1 MarC family protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18428.21 Da        Isoelectric Point: 5.3476

>NTDB_id=509161 I5770_RS00990 WP_009364346.1 202039..202548(+) (ssb) [Brucella sp. BO2]
MAGSVNKVILVGNLGADPEIRRLNSGDMVANLRIATSESWRDRQTGERKDRTEWHSVVIFNENLAKVAEQYLKKGAKVYI
EGALQTRKWQDQNGNDRYSTEIVLQKFRGELQMLDSRSEGGEGRSFGGGGNRNQMSDYSGGGGDFGSSGPSSGGSSGGFS
RDLDDEIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=509161 I5770_RS00990 WP_009364346.1 202039..202548(+) (ssb) [Brucella sp. BO2]
ATGGCTGGTAGCGTCAACAAGGTCATTCTGGTCGGCAATCTTGGTGCAGATCCTGAAATTCGCCGCCTGAATTCCGGCGA
TATGGTTGCCAACCTGCGCATTGCAACCTCGGAAAGCTGGCGTGACCGCCAGACCGGCGAACGCAAGGATCGCACCGAAT
GGCACAGCGTCGTCATCTTCAATGAAAATCTCGCCAAGGTTGCCGAACAATATCTGAAGAAGGGCGCCAAGGTTTATATC
GAAGGCGCGCTCCAGACCCGCAAGTGGCAGGATCAGAACGGCAATGACCGTTATTCAACGGAAATCGTGCTGCAAAAATT
CCGTGGAGAGCTTCAGATGCTCGACAGCCGCAGCGAAGGCGGCGAGGGTCGTTCCTTCGGGGGTGGTGGCAACCGCAACC
AGATGTCGGATTATTCCGGCGGTGGTGGAGATTTCGGCTCATCCGGCCCATCTTCGGGCGGCAGCAGCGGCGGTTTCTCG
CGCGATCTGGACGATGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.421

100

0.544
  ssb Vibrio cholerae strain A1552

48.555

100

0.497
  ssb Neisseria meningitidis MC58

39.106

100

0.414
  ssb Neisseria gonorrhoeae MS11

37.989

100

0.402