Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I5Z97_RS05255 Genome accession   NZ_CP065386
Coordinates   1078405..1078947 (+) Length   180 a.a.
NCBI ID   WP_021115958.1    Uniprot ID   A0A836YZ57
Organism   Glaesserella parasuis strain LHDR_HPS_1_2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1073405..1083947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5Z97_RS05245 (I5Z97_05235) - 1074854..1075234 (-) 381 WP_021114866.1 YacL family protein -
  I5Z97_RS05250 (I5Z97_05240) uvrA 1075318..1078146 (-) 2829 WP_082259249.1 excinuclease ABC subunit UvrA -
  I5Z97_RS05255 (I5Z97_05245) ssb 1078405..1078947 (+) 543 WP_021115958.1 single-stranded DNA-binding protein Machinery gene
  I5Z97_RS05260 (I5Z97_05250) - 1079101..1080588 (-) 1488 WP_078208823.1 helicase HerA-like C-terminal domain-containing protein -
  I5Z97_RS05265 (I5Z97_05255) rhlB 1080598..1081818 (-) 1221 WP_021112303.1 ATP-dependent RNA helicase RhlB -
  I5Z97_RS05270 (I5Z97_05260) - 1081882..1082154 (-) 273 WP_005712616.1 HigA family addiction module antitoxin -
  I5Z97_RS05275 (I5Z97_05265) - 1082165..1082443 (-) 279 WP_005712614.1 type II toxin-antitoxin system RelE/ParE family toxin -
  I5Z97_RS05280 (I5Z97_05270) argF 1082592..1083602 (+) 1011 WP_021115969.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19938.78 Da        Isoelectric Point: 4.9833

>NTDB_id=509130 I5Z97_RS05255 WP_021115958.1 1078405..1078947(+) (ssb) [Glaesserella parasuis strain LHDR_HPS_1_2]
MAGVNKVIIVGNLGNDPDMRTMPNGDAVATLSVATSESWNDKMTGERREVTEWHRIVFFRRQAEVAGQYLRKGSKVYVEG
KLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRSSGGDFGGNQGSGWNQAPAQTNYNQGGYSDNYAQNNNFNGGNATRPQPA
QKPAAQAEPPMDNFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=509130 I5Z97_RS05255 WP_021115958.1 1078405..1078947(+) (ssb) [Glaesserella parasuis strain LHDR_HPS_1_2]
ATGGCAGGTGTAAATAAAGTAATTATTGTCGGCAATCTCGGTAATGACCCAGATATGCGTACAATGCCAAACGGCGATGC
GGTTGCAACATTAAGCGTAGCAACCAGTGAAAGTTGGAACGATAAAATGACAGGCGAACGCCGTGAGGTCACCGAATGGC
ACCGTATCGTTTTCTTCCGTCGTCAAGCAGAAGTAGCAGGACAATACTTACGCAAAGGTTCAAAAGTCTATGTAGAAGGC
AAGCTCAAAACACGCAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTACTACAAAT
GTTAGACAGCCGTAGCAGTGGCGGTGATTTTGGCGGAAATCAAGGTAGCGGTTGGAACCAAGCACCAGCGCAAACCAACT
ACAATCAAGGCGGCTACAGCGACAACTATGCTCAAAATAACAACTTCAATGGGGGCAACGCAACCAGACCGCAACCAGCC
CAAAAACCTGCGGCTCAAGCAGAACCACCAATGGATAATTTTGATGATGATATTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A836YZ57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

100

100

1
  ssb Vibrio cholerae strain A1552

50.265

100

0.528
  ssb Neisseria gonorrhoeae MS11

44.505

100

0.45
  ssb Neisseria meningitidis MC58

43.956

100

0.444