Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG/cglG   Type   Machinery gene
Locus tag   SAIN_RS01005 Genome accession   NC_022244
Coordinates   196427..196753 (+) Length   108 a.a.
NCBI ID   WP_021001234.1    Uniprot ID   -
Organism   Streptococcus anginosus C1051     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 191427..201753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAIN_RS00970 (SAIN_0192) - 192718..193083 (+) 366 WP_003027003.1 DUF1033 family protein -
  SAIN_RS00975 (SAIN_0193) comGA 193153..194094 (+) 942 WP_003027001.1 competence type IV pilus ATPase ComGA Machinery gene
  SAIN_RS00980 (SAIN_0194) comGB 194036..195058 (+) 1023 WP_041783985.1 competence type IV pilus assembly protein ComGB Machinery gene
  SAIN_RS00985 (SAIN_0195) comGC 195055..195372 (+) 318 WP_003028473.1 competence type IV pilus major pilin ComGC Machinery gene
  SAIN_RS00990 (SAIN_0196) comGD 195332..195760 (+) 429 WP_021001232.1 competence type IV pilus minor pilin ComGD Machinery gene
  SAIN_RS00995 (SAIN_0197) comGE/cglE 195732..196025 (+) 294 WP_021001233.1 competence type IV pilus minor pilin ComGE Machinery gene
  SAIN_RS01000 comGF/cglF 196009..196446 (+) 438 WP_041783987.1 competence type IV pilus minor pilin ComGF Machinery gene
  SAIN_RS01005 (SAIN_0198) comGG/cglG 196427..196753 (+) 327 WP_021001234.1 competence type IV pilus minor pilin ComGG Machinery gene
  SAIN_RS01010 (SAIN_0199) comGH 196825..197778 (+) 954 WP_021001235.1 class I SAM-dependent methyltransferase Machinery gene
  SAIN_RS01015 (SAIN_0200) - 197825..199024 (+) 1200 WP_021001236.1 acetate kinase -
  SAIN_RS01020 (SAIN_0201) glmS 199376..201190 (+) 1815 WP_003026983.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12941.12 Da        Isoelectric Point: 10.7614

>NTDB_id=50855 SAIN_RS01005 WP_021001234.1 196427..196753(+) (comGG/cglG) [Streptococcus anginosus C1051]
MWKQKVKAGIMLYALFMAAVFSLLLQFYLHRQTANHRNFTLNRERIQAYAMALLANENSKQREFDKGYVRDQKSEKELIL
TVTMKTGRRYQFSFPAEKEKQMDKRLNK

Nucleotide


Download         Length: 327 bp        

>NTDB_id=50855 SAIN_RS01005 WP_021001234.1 196427..196753(+) (comGG/cglG) [Streptococcus anginosus C1051]
GTGTGGAAACAGAAAGTTAAAGCGGGCATTATGCTCTATGCACTCTTTATGGCGGCAGTTTTTAGCTTGCTTTTGCAATT
TTACCTTCATCGGCAAACTGCTAATCATAGGAATTTCACCCTAAACCGAGAACGAATACAGGCTTATGCAATGGCTCTTC
TAGCTAACGAAAATTCTAAGCAAAGGGAATTTGATAAAGGGTATGTCCGAGACCAAAAGAGTGAGAAAGAGCTCATCCTG
ACAGTAACAATGAAGACTGGTCGCCGTTATCAATTTTCTTTTCCAGCTGAAAAAGAAAAGCAGATGGATAAAAGATTGAA
TAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus mitis NCTC 12261

48.039

94.444

0.454
  comGG/cglG Streptococcus mitis SK321

44.118

94.444

0.417
  comGG/cglG Streptococcus pneumoniae Rx1

42.574

93.519

0.398
  comGG/cglG Streptococcus pneumoniae D39

42.574

93.519

0.398
  comGG/cglG Streptococcus pneumoniae R6

42.574

93.519

0.398
  comGG/cglG Streptococcus pneumoniae TIGR4

42.574

93.519

0.398
  comGG Streptococcus mutans UA140

39.806

95.37

0.38
  comGG Streptococcus mutans UA159

39.806

95.37

0.38

Multiple sequence alignment