Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IUA53_RS01165 Genome accession   NZ_CP065233
Coordinates   275532..276101 (+) Length   189 a.a.
NCBI ID   WP_196898024.1    Uniprot ID   A0A349TTZ8
Organism   Alteromonas sp. B31-7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 270532..281101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUA53_RS01150 (IUA53_01150) - 271309..272364 (+) 1056 WP_044445957.1 UDP-glucose--hexose-1-phosphate uridylyltransferase -
  IUA53_RS01155 (IUA53_01155) galK 272357..273496 (+) 1140 WP_044055584.1 galactokinase -
  IUA53_RS01160 (IUA53_01160) - 273762..275324 (+) 1563 WP_196898022.1 sodium/sugar symporter -
  IUA53_RS01165 (IUA53_01165) ssb 275532..276101 (+) 570 WP_196898024.1 single-stranded DNA-binding protein Machinery gene
  IUA53_RS01170 (IUA53_01170) - 276380..277648 (+) 1269 WP_196898026.1 dienelactone hydrolase family protein -
  IUA53_RS01175 (IUA53_01175) - 277921..279003 (+) 1083 WP_196898028.1 hypothetical protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20556.48 Da        Isoelectric Point: 4.9658

>NTDB_id=508288 IUA53_RS01165 WP_196898024.1 275532..276101(+) (ssb) [Alteromonas sp. B31-7]
MATKGVNKVILVGNLGNDPEVRYMPNGNAVANLSLATSESWKDQQGQVQERTEWHRLTMYRRLAEIAGEYLKKGSQIYVE
GKLQTRKWQDQQGQDRYTTEIIVDQMQMLGGRGGEAGGGSGGYQRQQSSQGGGYNQNQGGGYNQPAPQGAPQGGQQGGYN
QAPQGGGQSQPKTPPMAEPDFDFDDDIPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=508288 IUA53_RS01165 WP_196898024.1 275532..276101(+) (ssb) [Alteromonas sp. B31-7]
ATGGCAACGAAAGGCGTTAATAAGGTTATTCTTGTCGGAAACCTTGGCAATGATCCTGAAGTAAGATACATGCCAAACGG
AAACGCCGTTGCGAACTTAAGCCTTGCCACCAGTGAAAGCTGGAAGGACCAACAGGGTCAGGTTCAAGAACGCACTGAGT
GGCACCGTCTTACCATGTACCGTCGCTTAGCAGAAATTGCCGGAGAGTACCTGAAAAAGGGCTCGCAAATTTACGTTGAA
GGTAAACTTCAAACCCGTAAATGGCAAGATCAACAAGGGCAAGATCGCTATACTACAGAAATTATTGTCGACCAAATGCA
AATGCTTGGCGGCCGTGGTGGAGAAGCTGGCGGCGGCAGCGGTGGTTATCAGCGTCAGCAGAGCAGTCAAGGTGGTGGTT
ACAACCAAAACCAAGGCGGTGGATATAATCAGCCTGCTCCACAAGGCGCTCCGCAAGGTGGTCAACAAGGCGGATATAAT
CAAGCTCCACAAGGTGGCGGTCAGTCGCAGCCTAAAACACCGCCAATGGCAGAGCCAGACTTTGATTTTGACGATGACAT
TCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A349TTZ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

55.155

100

0.566
  ssb Vibrio cholerae strain A1552

53.608

100

0.55
  ssb Neisseria meningitidis MC58

49.189

97.884

0.481
  ssb Neisseria gonorrhoeae MS11

48.649

97.884

0.476