Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IT895_RS00560 Genome accession   NZ_CP065230
Coordinates   123105..123668 (+) Length   187 a.a.
NCBI ID   WP_066318997.1    Uniprot ID   A0A7T0REU9
Organism   Halomonas sp. A40-4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 118105..128668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IT895_RS00550 (IT895_00550) uvrA 118618..121461 (-) 2844 WP_199284430.1 excinuclease ABC subunit UvrA -
  IT895_RS00555 (IT895_00555) - 121654..123033 (+) 1380 WP_199284431.1 MFS transporter -
  IT895_RS00560 (IT895_00560) ssb 123105..123668 (+) 564 WP_066318997.1 single-stranded DNA-binding protein Machinery gene
  IT895_RS00565 (IT895_00565) - 123714..124604 (+) 891 WP_199284432.1 sugar nucleotide-binding protein -
  IT895_RS00570 (IT895_00570) - 124601..125329 (+) 729 WP_085917585.1 lysophospholipid acyltransferase family protein -
  IT895_RS00575 (IT895_00575) fabB 125416..126633 (-) 1218 WP_085917586.1 beta-ketoacyl-ACP synthase I -
  IT895_RS00580 (IT895_00580) fabA 126646..127161 (-) 516 WP_066319005.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 20711.54 Da        Isoelectric Point: 4.7599

>NTDB_id=508242 IT895_RS00560 WP_066318997.1 123105..123668(+) (ssb) [Halomonas sp. A40-4]
MARGINKVILIGNLGQDPEVRFTPSGTAVANLNLATTDTWMDRQSGQRQERTEWHRVVMFNKTAEIAQQYLKKGSKVYIE
GRLQTRKWQDQNGQDRYSTEIVANDMQMLDSRGGDYQGGGAPNNYAQGGQGGQPQPPQGDQYGGQGANQPQRAPQQNQPA
PPQGQQNNQYGAPDPGNFDDFDDEIPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=508242 IT895_RS00560 WP_066318997.1 123105..123668(+) (ssb) [Halomonas sp. A40-4]
ATGGCTCGCGGCATTAACAAGGTTATCTTGATCGGCAACCTCGGACAGGATCCTGAGGTACGGTTCACGCCCTCCGGGAC
AGCGGTTGCCAATCTTAATCTGGCCACCACTGATACCTGGATGGATCGCCAGAGTGGCCAGCGCCAGGAGCGCACCGAGT
GGCACCGGGTGGTGATGTTCAACAAAACCGCCGAAATTGCCCAGCAATACCTCAAGAAAGGCTCCAAGGTTTACATCGAA
GGTCGTTTGCAAACCCGCAAATGGCAGGACCAGAATGGTCAGGACCGCTACAGCACTGAAATCGTTGCCAATGACATGCA
GATGCTTGATTCCCGCGGCGGTGATTACCAGGGCGGCGGGGCGCCCAATAACTATGCGCAAGGTGGGCAGGGTGGCCAAC
CCCAGCCGCCTCAGGGTGACCAATACGGCGGACAAGGCGCTAACCAGCCGCAGCGAGCGCCCCAGCAAAACCAGCCCGCA
CCGCCCCAAGGCCAGCAAAACAACCAGTATGGCGCCCCTGACCCCGGCAATTTCGATGATTTCGACGATGAGATTCCGTT
CTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T0REU9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.886

100

0.556
  ssb Glaesserella parasuis strain SC1401

49.744

100

0.519
  ssb Neisseria meningitidis MC58

47.594

100

0.476
  ssb Neisseria gonorrhoeae MS11

47.594

100

0.476