Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   I3X05_RS10370 Genome accession   NZ_CP065217
Coordinates   2161274..2161861 (-) Length   195 a.a.
NCBI ID   WP_045571933.1    Uniprot ID   A0A0F2HAE0
Organism   Vibrio navarrensis strain 20-VB00237     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2156274..2166861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3X05_RS10350 (I3X05_10700) - 2156571..2157833 (-) 1263 WP_193157815.1 DUF945 family protein -
  I3X05_RS10355 (I3X05_10705) - 2158022..2159956 (+) 1935 WP_045571931.1 ATP-binding protein -
  I3X05_RS10360 (I3X05_10710) - 2159949..2160446 (+) 498 WP_039443801.1 response regulator -
  I3X05_RS10365 (I3X05_10715) - 2160661..2161209 (+) 549 WP_045571932.1 hypothetical protein -
  I3X05_RS10370 (I3X05_10720) tfoX 2161274..2161861 (-) 588 WP_045571933.1 TfoX/Sxy family DNA transformation protein Regulator
  I3X05_RS10375 (I3X05_10725) - 2162219..2163139 (+) 921 WP_045571934.1 HDOD domain-containing protein -
  I3X05_RS10380 (I3X05_10730) - 2163473..2164378 (+) 906 WP_045571935.1 lysine exporter LysO family protein -
  I3X05_RS10385 (I3X05_10735) - 2164451..2164963 (+) 513 WP_045571936.1 hypothetical protein -
  I3X05_RS10390 (I3X05_10740) panP 2165134..2166789 (+) 1656 WP_045571937.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22375.52 Da        Isoelectric Point: 6.6977

>NTDB_id=508197 I3X05_RS10370 WP_045571933.1 2161274..2161861(-) (tfoX) [Vibrio navarrensis strain 20-VB00237]
MDMTEQTFFNYVSQFGDFQKRSMFGGIGLFADDAMFALISNDCCYLRGSNGLDEQLTELGCEKYRHIKKQTTATVNYYDI
SALLETQYADLDSLVKKSIECSVHQRSFQKSSASRRLRDLPNMQLTLERMVKKAGIDDVETFIELGAVEVFNRVRQAYGN
DVDVKLLWKFAGAVEGIHWKLLQEPRRRQLLSACQ

Nucleotide


Download         Length: 588 bp        

>NTDB_id=508197 I3X05_RS10370 WP_045571933.1 2161274..2161861(-) (tfoX) [Vibrio navarrensis strain 20-VB00237]
ATGGATATGACAGAGCAAACTTTTTTTAACTATGTTAGTCAGTTTGGTGATTTCCAAAAACGTTCTATGTTTGGCGGTAT
CGGATTATTCGCTGATGATGCGATGTTCGCTTTGATTAGCAACGATTGCTGCTATCTTCGTGGCAGCAACGGCTTGGATG
AACAACTGACAGAACTAGGGTGCGAAAAGTATCGTCATATAAAGAAACAGACGACTGCAACGGTGAACTACTACGACATT
AGCGCGTTGTTAGAAACACAGTATGCGGATCTGGATAGTCTGGTCAAAAAGTCAATTGAGTGTTCCGTTCATCAGCGTAG
CTTTCAAAAATCGTCCGCTAGCCGTCGGCTTAGAGATCTGCCGAATATGCAGCTGACATTGGAGCGCATGGTAAAGAAAG
CGGGTATAGACGATGTTGAGACATTTATCGAACTCGGTGCTGTGGAAGTGTTTAATCGAGTACGGCAAGCGTACGGCAAT
GATGTTGATGTCAAACTGCTGTGGAAATTTGCCGGTGCGGTAGAGGGCATCCACTGGAAACTTTTGCAAGAGCCTCGTCG
TCGCCAACTGCTTTCTGCTTGTCAGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(11-101)

TfoX C-terminal domain (TfoX_C)

(114-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F2HAE0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio campbellii strain DS40M4

75.385

100

0.754
  tfoX Vibrio parahaemolyticus RIMD 2210633

74.872

100

0.749
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

73.057

98.974

0.723
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

73.057

98.974

0.723
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

73.057

98.974

0.723
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

73.057

98.974

0.723
  tfoX Vibrio cholerae strain A1552

73.057

98.974

0.723
  tfoX Aliivibrio fischeri ES114

57.592

97.949

0.564