Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   ITG08_RS11830 Genome accession   NZ_CP065206
Coordinates   2570751..2571332 (+) Length   193 a.a.
NCBI ID   WP_010441453.1    Uniprot ID   A0AAN0N8Q4
Organism   Vibrio cyclitrophicus strain ED653     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2565751..2576332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITG08_RS11810 (ITG08_11785) panP 2566048..2567691 (-) 1644 WP_010441464.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  ITG08_RS11815 (ITG08_11790) - 2567811..2568338 (-) 528 WP_010441462.1 hypothetical protein -
  ITG08_RS11820 (ITG08_11795) - 2568513..2569418 (-) 906 WP_010441460.1 lysine exporter LysO family protein -
  ITG08_RS11825 (ITG08_11800) - 2569473..2570393 (-) 921 WP_010441455.1 HDOD domain-containing protein -
  ITG08_RS11830 (ITG08_11805) tfoX 2570751..2571332 (+) 582 WP_010441453.1 TfoX/Sxy family DNA transformation protein Regulator
  ITG08_RS11835 (ITG08_11810) - 2571465..2572007 (-) 543 WP_004734692.1 hypothetical protein -
  ITG08_RS11840 (ITG08_11815) - 2572407..2572904 (-) 498 WP_010441451.1 response regulator -
  ITG08_RS11845 (ITG08_11820) - 2572897..2574840 (-) 1944 WP_032545401.1 ATP-binding protein -
  ITG08_RS11850 (ITG08_11825) - 2575024..2576286 (+) 1263 WP_010441447.1 DUF945 family protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 22237.74 Da        Isoelectric Point: 9.7662

>NTDB_id=508026 ITG08_RS11830 WP_010441453.1 2570751..2571332(+) (tfoX) [Vibrio cyclitrophicus strain ED653]
MTETAFINYMNQFGKHQKRSMFGGMGLFQNDAMFALLSEGCLFIRGGKSLDKKLTDLDCEKYRHVKKQTTATVNYYDITD
LFTCEHPDLDSIIRTSIDNSIQQRSFKKSSASRRLRDLPNMQLTLERMVKKAGVDDVSMFMQLGAPEVFNKVRKAYGNDV
DLKLLWKFAGAIDGIHWKLLQEPRKQQLLKSCH

Nucleotide


Download         Length: 582 bp        

>NTDB_id=508026 ITG08_RS11830 WP_010441453.1 2570751..2571332(+) (tfoX) [Vibrio cyclitrophicus strain ED653]
ATGACCGAGACAGCATTTATTAATTACATGAATCAATTTGGTAAGCATCAAAAACGTTCTATGTTCGGAGGTATGGGCCT
CTTTCAAAATGACGCCATGTTCGCTTTGTTGAGCGAAGGTTGTTTATTTATTAGAGGTGGAAAGTCATTAGATAAAAAAC
TGACAGATCTTGATTGTGAAAAGTATCGTCATGTAAAAAAACAGACGACAGCAACCGTAAACTATTACGATATTACTGAC
TTGTTTACATGTGAACACCCTGATTTGGATAGCATTATTCGTACTTCAATCGATAATTCAATTCAGCAACGTAGCTTCAA
AAAATCATCAGCTAGCCGTCGATTAAGAGATCTTCCGAACATGCAACTTACACTAGAGCGCATGGTTAAGAAGGCGGGTG
TGGATGATGTTTCAATGTTTATGCAGCTAGGCGCACCTGAAGTGTTTAATAAGGTTCGCAAAGCGTACGGCAATGATGTT
GACCTAAAACTACTTTGGAAATTTGCGGGTGCAATTGATGGTATCCATTGGAAACTGTTACAAGAACCACGCAAGCAGCA
ATTATTAAAGAGCTGCCACTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(112-190)

TfoX N-terminal domain (TfoX_N)

(9-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

72.539

100

0.725
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

72.539

100

0.725
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

72.539

100

0.725
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

72.539

100

0.725
  tfoX Vibrio cholerae strain A1552

72.539

100

0.725
  tfoX Vibrio campbellii strain DS40M4

68.912

100

0.689
  tfoX Vibrio parahaemolyticus RIMD 2210633

68.912

100

0.689
  tfoX Aliivibrio fischeri ES114

57.368

98.446

0.565