Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ITG08_RS07590 Genome accession   NZ_CP065206
Coordinates   1631194..1631751 (+) Length   185 a.a.
NCBI ID   WP_248370690.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus strain ED653     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1622558..1647004 1631194..1631751 within 0


Gene organization within MGE regions


Location: 1622558..1647004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITG08_RS07545 (ITG08_07535) - 1622558..1623706 (-) 1149 WP_248370665.1 ATP-binding protein -
  ITG08_RS07550 (ITG08_07540) - 1623810..1624976 (-) 1167 WP_248370667.1 DNA sulfur modification protein DndB -
  ITG08_RS07555 (ITG08_07545) - 1625114..1626352 (+) 1239 WP_248370688.1 hypothetical protein -
  ITG08_RS07560 (ITG08_07550) - 1626676..1627362 (-) 687 WP_248370669.1 hypothetical protein -
  ITG08_RS07565 (ITG08_07555) - 1627444..1627995 (-) 552 WP_248370671.1 YfbU family protein -
  ITG08_RS07570 (ITG08_07560) - 1628009..1628563 (-) 555 WP_248370673.1 hypothetical protein -
  ITG08_RS07575 (ITG08_07565) - 1628993..1629808 (-) 816 WP_248370675.1 hypothetical protein -
  ITG08_RS07580 (ITG08_07570) - 1630139..1630387 (+) 249 WP_102285343.1 plasmid replication protein RepB -
  ITG08_RS07585 (ITG08_07575) - 1630487..1631116 (+) 630 WP_248370677.1 hypothetical protein -
  ITG08_RS07590 (ITG08_07580) ssb 1631194..1631751 (+) 558 WP_248370690.1 single-stranded DNA-binding protein Machinery gene
  ITG08_RS07595 (ITG08_07585) csrD 1631913..1633928 (+) 2016 WP_016767796.1 RNase E specificity factor CsrD -
  ITG08_RS07600 (ITG08_07590) - 1633931..1635373 (+) 1443 WP_146531780.1 MSHA biogenesis protein MshI -
  ITG08_RS07605 (ITG08_07595) pilO 1635373..1636020 (+) 648 WP_010434330.1 type 4a pilus biogenesis protein PilO -
  ITG08_RS07610 (ITG08_07600) - 1636013..1636345 (+) 333 WP_016788320.1 MSHA biogenesis protein MshK -
  ITG08_RS07615 (ITG08_07605) mshL 1636361..1637998 (+) 1638 WP_248370679.1 pilus (MSHA type) biogenesis protein MshL -
  ITG08_RS07620 (ITG08_07610) - 1638052..1638891 (+) 840 WP_010434338.1 AAA family ATPase -
  ITG08_RS07625 (ITG08_07615) - 1638894..1640042 (+) 1149 WP_102265585.1 tetratricopeptide repeat protein -
  ITG08_RS07630 (ITG08_07620) - 1640032..1641756 (+) 1725 WP_010434345.1 GspE/PulE family protein -
  ITG08_RS07635 (ITG08_07625) - 1641769..1642992 (+) 1224 WP_010434347.1 type II secretion system F family protein -
  ITG08_RS07640 (ITG08_07630) - 1642996..1643451 (+) 456 WP_016790950.1 hypothetical protein -
  ITG08_RS07645 (ITG08_07635) - 1643531..1644106 (+) 576 WP_010434354.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ITG08_RS22900 (ITG08_07640) - 1644142..1644609 (+) 468 WP_016799129.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ITG08_RS07655 (ITG08_07645) - 1644756..1645274 (+) 519 WP_016798618.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ITG08_RS07660 (ITG08_07650) - 1645271..1645840 (+) 570 WP_016789723.1 type II secretion system protein -
  ITG08_RS07665 (ITG08_07655) - 1645840..1646586 (+) 747 WP_010434361.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ITG08_RS07670 (ITG08_07660) - 1646576..1647004 (+) 429 WP_016799834.1 hypothetical protein -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20433.61 Da        Isoelectric Point: 5.2358

>NTDB_id=508020 ITG08_RS07590 WP_248370690.1 1631194..1631751(+) (ssb) [Vibrio cyclitrophicus strain ED653]
MMSRGSVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVY
IEGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNQQQGGWGQPQQPQQQQQQYSAPAQQQPKA
PQQAPQQAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=508020 ITG08_RS07590 WP_248370690.1 1631194..1631751(+) (ssb) [Vibrio cyclitrophicus strain ED653]
ATTATGAGTAGAGGTTCGGTTAATAAAGTTATCTTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCAAA
TGGCGGCGCAGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGACAAAGCAACTGGCGAACAGCGTGAAAAAA
CAGAATGGCACCGTGTTGCTCTGTTTGGCAAGCTGGCGGAAGTTGCTGGTGAGTACCTACGTAAAGGTTCTCAAGTTTAC
ATTGAAGGTCAACTTCAGACTCGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACAACTGAAGTGGTTGTTCAAGG
CTTCAACGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGCGGTGCTCCTGCTCAAGGTGGTATGGGTAACCAACAGC
AAGGTGGTTGGGGTCAACCACAGCAACCACAACAGCAGCAACAACAATACAGTGCTCCTGCTCAACAGCAGCCGAAAGCA
CCTCAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCACCGATGGATTTTGATGATGACATCCCATTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(7-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.749

100

0.816
  ssb Glaesserella parasuis strain SC1401

56.989

100

0.573
  ssb Neisseria meningitidis MC58

48.108

100

0.481
  ssb Neisseria gonorrhoeae MS11

48.108

100

0.481