Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   I2439_RS08890 Genome accession   NZ_CP065191
Coordinates   1854824..1856323 (-) Length   499 a.a.
NCBI ID   WP_111678545.1    Uniprot ID   A0AAX2LFL7
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ46     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1849824..1861323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2439_RS08875 (HIEAAJJG_01796) amiF 1851903..1852826 (-) 924 WP_012516278.1 ATP-binding cassette domain-containing protein Regulator
  I2439_RS08880 (HIEAAJJG_01797) amiE 1852819..1853889 (-) 1071 WP_012516279.1 ABC transporter ATP-binding protein Regulator
  I2439_RS08885 (HIEAAJJG_01798) amiD 1853898..1854824 (-) 927 WP_043030145.1 oligopeptide ABC transporter permease OppC Regulator
  I2439_RS08890 (HIEAAJJG_01799) amiC 1854824..1856323 (-) 1500 WP_111678545.1 ABC transporter permease Regulator
  I2439_RS08895 (HIEAAJJG_01800) amiA3 1856387..1858363 (-) 1977 WP_196819673.1 peptide ABC transporter substrate-binding protein Regulator
  I2439_RS08900 (HIEAAJJG_01801) pbp3 1858672..1859910 (+) 1239 WP_111678549.1 D-alanyl-D-alanine carboxypeptidase PBP3 -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 55670.09 Da        Isoelectric Point: 10.1102

>NTDB_id=507848 I2439_RS08890 WP_111678545.1 1854824..1856323(-) (amiC) [Streptococcus equi subsp. zooepidemicus strain SEZ46]
MKKYIFERILRSLVSILLVTALTYTIVFTLVPKSLIFKQDPNYNKMVTTPDKKTNYLNTVFENMGYISYYSSKELQNKAS
KLDPSVTTAPTKANEKIYQKYIASVGNGWKLGRFTESKGFYAVREIPIYERVWNFFSHLVVIDHPWKIKDPKNPNLERYV
RPEIDPAVGPALVGSGTKHKYLIYFNKQFPFIHQNIVTFDLGVSYPTYANIPVVQVITQGQGRTLQKEVTFPTGKTKLSS
IDIYSRTYKTPSSLDSKDIANFGKGDAYTNTQNNYAEPSMIANSFKIGIFGVLLSYLFGLPIGMLMAYYKNGWFDRFSTA
ATTFMLALPSIALIYIVRFVGSYLGLPDTFPLLGAGDVRSYVLPALILGILGTPSTVVWFRRYIVDLQGSDFVRFARAKG
LSEFEISKNHLFKQAMVPIVNGIPQAIVGTIAGATLTETVFAFPGMGKMLIDSIKAANNSMVVGLVFIFAVLSILALLVG
DILMTILDPRIKLSGKGGK

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=507848 I2439_RS08890 WP_111678545.1 1854824..1856323(-) (amiC) [Streptococcus equi subsp. zooepidemicus strain SEZ46]
ATGAAAAAATACATATTTGAACGCATATTGAGGTCGCTTGTTTCAATCCTGCTGGTAACTGCACTAACCTATACCATTGT
TTTTACCTTAGTGCCAAAAAGCTTGATTTTTAAGCAAGACCCTAATTACAATAAGATGGTGACAACACCTGATAAGAAAA
CCAATTATCTAAATACTGTTTTTGAAAATATGGGCTATATTTCCTATTACAGCAGTAAAGAACTGCAGAATAAGGCTTCA
AAGCTTGATCCTTCTGTAACAACTGCACCAACCAAGGCCAATGAAAAAATATATCAAAAATATATTGCTTCTGTCGGTAA
TGGTTGGAAGCTTGGGCGCTTTACAGAAAGTAAGGGATTTTATGCCGTTAGAGAGATTCCAATCTATGAGCGCGTGTGGA
ATTTCTTTAGCCATTTGGTTGTGATTGATCACCCATGGAAAATCAAGGATCCAAAAAATCCAAATCTAGAGCGTTATGTG
CGACCAGAAATTGACCCTGCTGTTGGTCCAGCCTTAGTTGGCTCTGGTACTAAGCACAAATACTTGATTTACTTCAACAA
GCAATTTCCATTTATCCATCAAAATATCGTAACCTTTGATTTGGGAGTGTCCTATCCAACCTATGCCAATATTCCAGTTG
TTCAGGTTATCACTCAAGGACAAGGAAGAACACTTCAAAAAGAGGTCACCTTCCCAACAGGCAAAACAAAGCTGTCTTCA
ATCGATATTTACTCTCGAACCTATAAAACACCAAGCTCTTTAGATAGCAAGGATATTGCCAATTTTGGTAAGGGTGATGC
TTATACCAATACACAAAATAACTATGCAGAGCCATCTATGATTGCAAATTCCTTTAAGATTGGTATTTTCGGTGTCTTGT
TGTCCTATCTTTTTGGTTTGCCAATTGGTATGCTGATGGCTTATTATAAGAATGGCTGGTTTGACCGTTTTTCAACGGCT
GCCACAACCTTTATGTTAGCCCTGCCAAGCATTGCGCTTATCTATATTGTTCGATTTGTCGGTTCTTATTTGGGCTTGCC
AGATACCTTTCCGCTGCTAGGAGCAGGAGATGTTAGGTCTTATGTGCTGCCTGCTCTTATATTAGGAATTCTTGGTACAC
CAAGTACAGTAGTTTGGTTCCGGCGCTATATTGTGGACCTGCAAGGCAGTGATTTTGTTCGCTTTGCACGAGCAAAGGGG
CTTTCAGAATTCGAGATTTCAAAAAATCACCTCTTTAAGCAGGCTATGGTGCCTATTGTTAACGGTATTCCACAGGCCAT
TGTCGGAACAATTGCTGGTGCAACCTTGACAGAGACGGTGTTTGCTTTCCCAGGAATGGGTAAAATGCTGATTGATTCCA
TAAAAGCTGCTAATAACTCTATGGTTGTTGGTCTTGTCTTTATTTTTGCTGTTTTATCAATATTAGCCTTGCTAGTAGGT
GATATTCTTATGACGATTTTAGATCCACGTATTAAATTATCAGGTAAAGGAGGTAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

62.525

100

0.625
  amiC Streptococcus thermophilus LMG 18311

62.525

100

0.625
  amiC Streptococcus thermophilus LMD-9

62.325

100

0.623