Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   I2439_RS08875 Genome accession   NZ_CP065191
Coordinates   1851903..1852826 (-) Length   307 a.a.
NCBI ID   WP_012516278.1    Uniprot ID   A0AAW3GKE0
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ46     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1846903..1857826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2439_RS08875 (HIEAAJJG_01796) amiF 1851903..1852826 (-) 924 WP_012516278.1 ATP-binding cassette domain-containing protein Regulator
  I2439_RS08880 (HIEAAJJG_01797) amiE 1852819..1853889 (-) 1071 WP_012516279.1 ABC transporter ATP-binding protein Regulator
  I2439_RS08885 (HIEAAJJG_01798) amiD 1853898..1854824 (-) 927 WP_043030145.1 oligopeptide ABC transporter permease OppC Regulator
  I2439_RS08890 (HIEAAJJG_01799) amiC 1854824..1856323 (-) 1500 WP_111678545.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34670.89 Da        Isoelectric Point: 6.9308

>NTDB_id=507845 I2439_RS08875 WP_012516278.1 1851903..1852826(-) (amiF) [Streptococcus equi subsp. zooepidemicus strain SEZ46]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNETSSGEIRYDGKIINGKKSKS
EANELIRKIQMIFQDPAASLNERATVDYIISEGLYNFNLFKTEDERKEKIKQMMSEVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMDPEFVIADEPISALDVSVRAQVLNLLKKIQAEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFV
NPVHPYTKSLLSAVPIPDPILERQKKLVVYHPEQHDYSVDKPSMVEIKPNHFVWANQAEAERYRKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=507845 I2439_RS08875 WP_012516278.1 1851903..1852826(-) (amiF) [Streptococcus equi subsp. zooepidemicus strain SEZ46]
ATGTCTGAAAAATTAGTTGAAGTAAAAGACCTGGAGATTTCCTTTGGAGAGGGAAAGAAAAAGTTTGTTGCCGTTAAAAA
TGCCAATTTCTTTATCAATAAAGGAGAAACCTTTTCTCTTGTTGGAGAATCAGGCAGTGGAAAGACAACAATCGGTCGTG
CCATCATTGGTTTAAATGAAACAAGCTCAGGCGAAATCCGCTATGACGGTAAGATTATTAATGGTAAAAAATCAAAATCT
GAAGCTAATGAACTGATTAGAAAAATCCAAATGATTTTTCAGGATCCAGCAGCCAGCCTGAATGAGCGTGCAACGGTTGA
TTATATCATCTCAGAAGGCCTTTATAATTTTAACCTATTCAAAACAGAAGACGAACGTAAGGAAAAAATTAAACAGATGA
TGTCAGAGGTGGGCTTGCTTGCAGAGCACCTGACACGCTATCCTCATGAGTTTTCAGGCGGGCAGCGTCAGCGTATAGGT
ATTGCAAGAGCGCTTGTAATGGATCCGGAGTTTGTTATTGCTGATGAGCCGATTTCAGCTCTTGATGTATCTGTTCGTGC
TCAGGTCTTGAACCTGTTGAAGAAAATACAGGCTGAAAAAGGCTTGACCTATTTATTCATTGCTCATGATTTATCAGTTG
TGCGTTTTATTTCAGATCGTATTGCTGTTATTCACAAAGGAGTAATTGTTGAAGTCGCCGAAACAGAAGAGCTTTTTGTT
AATCCTGTTCACCCTTATACCAAATCTCTGCTGTCAGCGGTACCAATTCCAGATCCCATTTTAGAGCGTCAAAAGAAATT
GGTGGTTTATCATCCAGAGCAGCATGATTATTCTGTTGACAAGCCATCAATGGTGGAAATCAAACCAAATCACTTCGTCT
GGGCTAACCAGGCAGAAGCGGAGCGTTACCGCAAAGAGCTTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

83.007

99.674

0.827
  amiF Streptococcus thermophilus LMD-9

82.68

99.674

0.824
  amiF Streptococcus salivarius strain HSISS4

82.68

99.674

0.824