Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   I2439_RS08885 Genome accession   NZ_CP065191
Coordinates   1853898..1854824 (-) Length   308 a.a.
NCBI ID   WP_043030145.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ46     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1848898..1859824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2439_RS08875 (HIEAAJJG_01796) amiF 1851903..1852826 (-) 924 WP_012516278.1 ATP-binding cassette domain-containing protein Regulator
  I2439_RS08880 (HIEAAJJG_01797) amiE 1852819..1853889 (-) 1071 WP_012516279.1 ABC transporter ATP-binding protein Regulator
  I2439_RS08885 (HIEAAJJG_01798) amiD 1853898..1854824 (-) 927 WP_043030145.1 oligopeptide ABC transporter permease OppC Regulator
  I2439_RS08890 (HIEAAJJG_01799) amiC 1854824..1856323 (-) 1500 WP_111678545.1 ABC transporter permease Regulator
  I2439_RS08895 (HIEAAJJG_01800) amiA3 1856387..1858363 (-) 1977 WP_196819673.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34560.47 Da        Isoelectric Point: 7.1547

>NTDB_id=507847 I2439_RS08885 WP_043030145.1 1853898..1854824(-) (amiD) [Streptococcus equi subsp. zooepidemicus strain SEZ46]
MAAIDKNKFTFVELDSYASEVIDAPAYSYWKSVFRQFFSRKSTILMLVILIAIILMSFIYPMFANYDFGDVSNINDFSKR
YIAPNAEYWFGTDQNGQSLFDGVWYGARNSILISVIATIINMIIGVVIGGIWGVSKAVDKVMIEVYNIISNLPQMLIIIV
LTYSIGAGFWNLIFAFCVTGWIGIAYSIRVQILRYRDLEYNLASQTLGTPTHKIVIKNLLPQLVSVIVSMVSLLLPSYIS
SEAFLSFFGLGLPITEPSLGRLISNYSNNLTTNAYLFWIPLTTLILVSLPLYIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=507847 I2439_RS08885 WP_043030145.1 1853898..1854824(-) (amiD) [Streptococcus equi subsp. zooepidemicus strain SEZ46]
ATGGCAGCAATTGACAAAAATAAATTCACCTTTGTTGAATTGGATAGCTATGCATCAGAAGTCATTGATGCCCCTGCTTA
CTCTTATTGGAAATCTGTCTTTAGGCAATTCTTCTCACGTAAATCAACTATTTTGATGCTGGTTATTTTAATTGCTATTA
TTTTGATGAGCTTCATCTATCCTATGTTTGCCAACTATGACTTTGGTGATGTGAGCAATATTAATGATTTTTCAAAGCGT
TATATCGCACCTAATGCAGAGTATTGGTTTGGTACGGATCAAAATGGTCAATCGCTCTTTGATGGTGTTTGGTATGGTGC
TAGAAATTCAATCTTAATTTCAGTCATTGCTACCATCATCAATATGATTATTGGAGTTGTTATTGGTGGTATTTGGGGTG
TTTCCAAGGCAGTTGATAAGGTAATGATTGAAGTGTATAATATCATCTCTAACCTGCCGCAAATGCTCATTATCATTGTA
TTGACTTATTCTATCGGAGCAGGCTTTTGGAACTTGATTTTTGCCTTTTGTGTGACAGGCTGGATTGGAATTGCTTATTC
GATTCGTGTACAAATTTTGCGTTATCGTGATCTAGAATACAATTTAGCAAGTCAGACCTTAGGAACACCCACCCATAAAA
TTGTCATTAAAAATCTTTTGCCTCAATTGGTTTCGGTGATCGTTTCGATGGTTTCCTTGCTGTTGCCGTCCTACATTTCA
TCAGAGGCCTTCTTATCCTTCTTTGGCTTGGGATTACCAATCACAGAACCAAGCTTGGGTCGATTAATTTCAAATTATTC
AAACAATTTAACAACGAATGCCTATTTATTCTGGATTCCATTGACAACTCTTATTCTTGTTTCCCTACCTTTATACATTG
TAGGACAAAACTTAGCAGATGCTAGTGATCCAAGGACGCATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

75.325

100

0.753
  amiD Streptococcus thermophilus LMG 18311

74.351

100

0.744
  amiD Streptococcus thermophilus LMD-9

74.351

100

0.744