Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   I2439_RS07130 Genome accession   NZ_CP065191
Coordinates   1495256..1495978 (-) Length   240 a.a.
NCBI ID   WP_043039157.1    Uniprot ID   A0AAX2LJU3
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ46     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1490256..1500978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2439_RS07105 (HIEAAJJG_01438) pstB 1490421..1491173 (-) 753 WP_012677665.1 phosphate ABC transporter ATP-binding protein PstB -
  I2439_RS07110 (HIEAAJJG_01439) pstA 1491175..1491990 (-) 816 WP_043039154.1 phosphate ABC transporter permease PstA -
  I2439_RS07115 (HIEAAJJG_01440) pstC 1491983..1492846 (-) 864 WP_043039155.1 phosphate ABC transporter permease subunit PstC -
  I2439_RS07120 (HIEAAJJG_01441) - 1492916..1493788 (-) 873 WP_042357068.1 substrate-binding domain-containing protein -
  I2439_RS07125 (HIEAAJJG_01442) - 1493947..1495272 (-) 1326 WP_043039156.1 ATP-binding protein -
  I2439_RS07130 (HIEAAJJG_01443) vicR 1495256..1495978 (-) 723 WP_043039157.1 response regulator transcription factor Regulator
  I2439_RS07135 (HIEAAJJG_01444) - 1496389..1496544 (+) 156 WP_042670938.1 SPJ_0845 family protein -
  I2439_RS07140 (HIEAAJJG_01445) - 1496585..1497487 (+) 903 WP_021320980.1 permease -
  I2439_RS07145 (HIEAAJJG_01446) - 1497487..1498302 (+) 816 WP_042357070.1 TIGR03943 family protein -
  I2439_RS07150 (HIEAAJJG_01447) - 1498488..1499909 (-) 1422 WP_043039158.1 glycoside hydrolase family 1 protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 28083.53 Da        Isoelectric Point: 6.1653

>NTDB_id=507831 I2439_RS07130 WP_043039157.1 1495256..1495978(-) (vicR) [Streptococcus equi subsp. zooepidemicus strain SEZ46]
MTKRVLLVDDEEPILKLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDGIEVCKRLRAKGSKTPIMMV
SAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTEAEISGDGEERREPFYTMSQLRLYPERHEVYKDKELLPL
TPKEYELLLYLMKHPNMTLTRERLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKFKELKNDRTS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=507831 I2439_RS07130 WP_043039157.1 1495256..1495978(-) (vicR) [Streptococcus equi subsp. zooepidemicus strain SEZ46]
ATGACAAAACGAGTATTATTAGTAGATGATGAGGAGCCTATCTTAAAGCTACTGGATTATCACTTGGCCAAGGAGGGCTT
TGTGACAGAGATGGTAACAGATGGCCGTACTGCCTTGGCATTAGCTGAAAGAGAACCTTATGATTTTATTGTGTTAGATA
TTATGCTGCCGCAATTAGACGGTATCGAGGTCTGCAAAAGGCTTCGTGCTAAGGGAAGCAAAACCCCAATTATGATGGTT
TCTGCTAAAAGTGATGAATTTGACAAGGTTTTGGCTTTGGAACTGGGGGCAGATGATTATGTGACCAAGCCCTTTAGTCC
TAGAGAATTATTAGCGCGTGTCAAGGCTATTTTAAGGCGTACTGAAGCAGAGATTTCTGGTGATGGTGAGGAGCGTCGTG
AGCCTTTTTATACGATGAGTCAATTGCGTCTGTACCCAGAGCGACATGAGGTCTATAAGGACAAGGAGCTATTGCCATTA
ACCCCAAAGGAATATGAGCTACTGCTCTATCTCATGAAGCACCCTAATATGACCTTGACGCGTGAGCGGCTATTAGAGCG
TATCTGGGGTTATGACTTTGGCCAAGAAACACGTCTGGTAGACGTTCATATTGGCAAGCTCAGAGAAAAAATTGAGGACA
ATCCTAAGGCGCCTCAGTATATTCAAACCATTCGCGGCTATGGCTACAAATTTAAGGAGCTAAAGAATGATAGGACATCT
TAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(158-231)

Response regulator receiver domain (Response_reg)

(5-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

52.155

96.667

0.504
  micA Streptococcus pneumoniae Cp1015

50

95.833

0.479
  covR Lactococcus lactis subsp. lactis strain DGCC12653

43.59

97.5

0.425
  covR Streptococcus salivarius strain HSISS4

40.343

97.083

0.392